Literature DB >> 24894720

Application of amphipols for structure-functional analysis of TRP channels.

Kevin W Huynh1, Matthew R Cohen, Vera Y Moiseenkova-Bell.   

Abstract

Amphipathic polymers (amphipols), such as A8-35 and SApol, are a new tool for stabilizing integral membrane proteins in detergent-free conditions for structural and functional studies. Transient receptor potential (TRP) ion channels function as tetrameric protein complexes in a diverse range of cellular processes including sensory transduction. Mammalian TRP channels share ~20 % sequence similarity and are categorized into six subfamilies: TRPC (canonical), TRPV (vanilloid), TRPA (ankyrin), TRPM (melastatin), TRPP (polycystin), and TRPML (mucolipin). Due to the inherent difficulties in purifying eukaryotic membrane proteins, structural studies of TRP channels have been limited. Recently, A8-35 was essential in resolving the molecular architecture of the nociceptor TRPA1 and led to the determination of a high-resolution structure of the thermosensitive TRPV1 channel by cryo-EM. Newly developed maltose-neopentyl glycol (MNG) detergents have also proven to be useful in stabilizing TRP channels for structural analysis. In this review, we will discuss the impacts of amphipols and MNG detergents on structural studies of TRP channels by cryo-EM. We will compare how A8-35 and MNG detergents interact with the hydrophobic transmembrane domains of TRP channels. In addition, we will discuss what these cryo-EM studies reveal on the importance of screening different types of surfactants toward determining high-resolution structures of TRP channels.

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Year:  2014        PMID: 24894720      PMCID: PMC4198461          DOI: 10.1007/s00232-014-9684-6

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  47 in total

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Authors:  S Wilkens
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3.  Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity.

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Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

Review 4.  Interaction of membrane proteins and lipids with solubilizing detergents.

Authors:  M le Maire; P Champeil; J V Moller
Journal:  Biochim Biophys Acta       Date:  2000-11-23

5.  The capsaicin receptor: a heat-activated ion channel in the pain pathway.

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Journal:  Nature       Date:  1997-10-23       Impact factor: 49.962

6.  Amphipols: polymers that keep membrane proteins soluble in aqueous solutions.

Authors:  C Tribet; R Audebert; J L Popot
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

7.  A capsaicin-receptor homologue with a high threshold for noxious heat.

Authors:  M J Caterina; T A Rosen; M Tominaga; A J Brake; D Julius
Journal:  Nature       Date:  1999-04-01       Impact factor: 49.962

Review 8.  Membrane proteins, lipids and detergents: not just a soap opera.

Authors:  Annela M Seddon; Paul Curnow; Paula J Booth
Journal:  Biochim Biophys Acta       Date:  2004-11-03

Review 9.  Amphipols: polymeric surfactants for membrane biology research.

Authors:  J-L Popot; E A Berry; D Charvolin; C Creuzenet; C Ebel; D M Engelman; M Flötenmeyer; F Giusti; Y Gohon; Q Hong; J H Lakey; K Leonard; H A Shuman; P Timmins; D E Warschawski; F Zito; M Zoonens; B Pucci; C Tribet
Journal:  Cell Mol Life Sci       Date:  2003-08       Impact factor: 9.261

10.  Mustard oils and cannabinoids excite sensory nerve fibres through the TRP channel ANKTM1.

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Journal:  Nature       Date:  2004-01-07       Impact factor: 49.962

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  15 in total

1.  Synthesis, characterization and applications of a perdeuterated amphipol.

Authors:  Fabrice Giusti; Jutta Rieger; Laurent J Catoire; Shuo Qian; Antonio N Calabrese; Thomas G Watkinson; Marina Casiraghi; Sheena E Radford; Alison E Ashcroft; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-03-21       Impact factor: 1.843

2.  Isolation of Escherichia coli mannitol permease, EIImtl, trapped in amphipol A8-35 and fluorescein-labeled A8-35.

Authors:  Milena Opačić; Fabrice Giusti; Jean-Luc Popot; Jaap Broos
Journal:  J Membr Biol       Date:  2014-06-22       Impact factor: 1.843

3.  Amphipol-mediated screening of molecular orthoses specific for membrane protein targets.

Authors:  Yann Ferrandez; Manuela Dezi; Mickael Bosco; Agathe Urvoas; Marie Valerio-Lepiniec; Christel Le Bon; Fabrice Giusti; Isabelle Broutin; Grégory Durand; Ange Polidori; Jean-Luc Popot; Martin Picard; Philippe Minard
Journal:  J Membr Biol       Date:  2014-08-03       Impact factor: 1.843

4.  Solution behavior and crystallization of cytochrome bc₁ in the presence of amphipols.

Authors:  Delphine Charvolin; Martin Picard; Li-Shar Huang; Edward A Berry; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-19       Impact factor: 1.843

Review 5.  Labeling and functionalizing amphipols for biological applications.

Authors:  Christel Le Bon; Jean-Luc Popot; Fabrice Giusti
Journal:  J Membr Biol       Date:  2014-04-03       Impact factor: 1.843

Review 6.  Dawning of a new era in TRP channel structural biology by cryo-electron microscopy.

Authors:  M Gregor Madej; Christine M Ziegler
Journal:  Pflugers Arch       Date:  2018-01-17       Impact factor: 3.657

7.  Molecular dynamics simulations of a membrane protein/amphipol complex.

Authors:  Jason D Perlmutter; Jean-Luc Popot; Jonathan N Sachs
Journal:  J Membr Biol       Date:  2014-06-15       Impact factor: 1.843

Review 8.  Amphipols for each season.

Authors:  Manuela Zoonens; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-27       Impact factor: 1.843

9.  Thermal fluctuations in amphipol A8-35 particles: a neutron scattering and molecular dynamics study.

Authors:  Moeava Tehei; Jason D Perlmutter; Fabrice Giusti; Jonathan N Sachs; Giuseppe Zaccai; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-09-10       Impact factor: 1.843

10.  How amphipols embed membrane proteins: global solvent accessibility and interaction with a flexible protein terminus.

Authors:  Manuel Etzkorn; Manuela Zoonens; Laurent J Catoire; Jean-Luc Popot; Sebastian Hiller
Journal:  J Membr Biol       Date:  2014-03-26       Impact factor: 1.843

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