| Literature DB >> 24885431 |
Jérôme LeGoff1, Hélène Péré, Laurent Bélec.
Abstract
Since the type of herpes simplex virus (HSV) infection affects prognosis and subsequent counseling, type-specific testing to distinguish HSV-1 from HSV-2 is always recommended. Although PCR has been the diagnostic standard method for HSV infections of the central nervous system, until now viral culture has been the test of choice for HSV genital infection. However, HSV PCR, with its consistently and substantially higher rate of HSV detection, could replace viral culture as the gold standard for the diagnosis of genital herpes in people with active mucocutaneous lesions, regardless of anatomic location or viral type. Alternatively, antigen detection-an immunofluorescence test or enzyme immunoassay from samples from symptomatic patients--could be employed, but HSV type determination is of importance. Type-specific serology based on glycoprotein G should be used for detecting asymptomatic individuals but widespread screening for HSV antibodies is not recommended. In conclusion, rapid and accurate laboratory diagnosis of HSV is now become a necessity, given the difficulty in making the clinical diagnosis of HSV, the growing worldwide prevalence of genital herpes and the availability of effective antiviral therapy.Entities:
Mesh:
Year: 2014 PMID: 24885431 PMCID: PMC4032358 DOI: 10.1186/1743-422X-11-83
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Figure 1Clinical course of primary genital herpes.
Recommendations for sample collection for the diagnosis of genital herpes infections, adapted from Domeika and colleagues[9]
| • Sterile needles | • Unroof the vesicles with a sterile needle | |
| • Sterile cotton-tipped, Dacron or nylon flocked swab on a wooden, plastic or aluminium shaft | • Collect the content of the vesicles with a sterile swab and: | |
| ○ apply to a microscope slide (for immunofluorescence staining) or ○ introduce into transport media for viral culture or NAAT. | ||
| • Microscope slides | ||
| • Sterile cotton-wool, Dacron or nylon flocked swab on a wooden, plastic or aluminium shaft | • Clean the external urethral opening region with a swab moistened in saline | |
| • Draw back the prepuce to avoid contamination when sampling | ||
| • Insert a sterile swab carefully into the external urethral meatus (to a depth of 0.5–2 cm) and collect urethral exudates for testing | ||
| • Gauze and cotton swabs,, dacron or nylon flocked swab on a wooden, plastic or aluminium shaft | • Similarly as for male skin or mucous membrane lesions | |
| • Microscope slides | ||
| • Sterile gauze swab (to remove excess discharge) | • Clean the introitus using a sterile gauze swab | |
| • Sterile cotton-wool, Dacron or nylon flocked swab on an aluminium shaft | • Carefully insert a sterile swab on an aluminium shaft into the urethra (to a depth of 0.5 cm) to collect exudates for testing | |
| • Vaginal speculum | • Insert the vaginal speculum, which may be moistened in advance with warm water and | |
| • Sterile gauze swab | ||
| • Sterile cotton-wool, Dacron or nylon flocked swab on a wooden or plastic shaft | • clean the cervical canal opening thoroughly with a sterile gauze swab | |
| • Insert a cotton-wool or Dacron swab carefully into the cervical canal (to a depth of 2 cm) and collect the material from lesions. | ||
| • Sterile cotton-wool, Dacron or nylon flocked swab on an aluminium shaft | • Insert a sterile swab on an aluminium shaft carefully through the hymen into the vagina, and collect the material from the back wall of the vagina | |
| • Sterile container for urine | • Ask the patient to collect the first 10–20 ml of voided urine (first catch) | |
| • The patients should avoid urinating for least two hours before sampling | ||
| • Sterile cotton-wool, Dacron or nylon flocked swab on an aluminium shaft | • purulent discharge must be removed before sampling with a sterile swab | |
| • Kimura platinum conjunctival scraper | • Move a swab over the conjunctiva of the inferior eyelid towards the interior angle of the eye (use a thin swab on an aluminium shaft for newborns) | |
| • Topical ophthalmic local anaesthetic | ||
| • The Kimura scraper is used to sample the bases of lesions (either ulcers or the bases of burst vesicles). Before collecting the sample, the spatula is sterilised by heating in a flame and allowed to cool | ||
| • Rectal speculum or proctoscope | • Rectal material is taken under direct vision, with the aid of a proctoscope or rectal speculum. Use of a blind technique results in considerable loss of sensitivity | |
| • Sterile cotton-wool, Dacron or nylon flocked swab on a wooden or aluminium shaft | ||
| • Insert a swab on a wooden or plastic shaft to a depth of 3 cm and collect the material from all rectal walls by circular motions for 10 seconds | ||
| • If faecal material is impacted, the swab should be discarded and the sampling procedure repeated. |
aMaterial from the rectum is collected when the patient has had anal sexual contact, when he suffers from anorectal inflammation, or if perianal skin or anal folds are thickened.
NAAT: nucleic acid amplification test.
Recommendations for sample transportation accordin g to the test method, adapted from Domeika and colleagues[9]
| • Immediately after sampling the material must be placed in appropriate transport medium, such as Eagle’s medium with addition of antibiotics | • Herpes simplex virus is sensitive to both the temperature and to drying out | |
| • The material should preferably be transported to the laboratory on ice, and kept at °4°C for up to 48 hours | ||
| • Material should not be kept for more than 4 hours at room temperature | ||
| • Accurately marked test tubes must be placed in a hermetic reservoir and transported to the laboratory accompanied by the relevant documentation including the investigation method requested | ||
| Transport medium is usually provided by the manufacturer of the diagnostic commercial assay | • The material is generallly delivered in special test tubes with transport medium according to the manufacturer’s instructions for each test | |
| • If the sample transportation procedure is not described in the manufacturer’s instructions or in-house test systems are used, transportation is performed as follows: | ||
| • Test tubes containing clinical material should be transported to the laboratory accompanied by the relevant documentation including the investigation method requested | ||
| • If there is a need to save the material for more than 24 hours, the smear should be fixed with 96% ethyl alcohol for three minutes | • If the rules of sampling and conditions of transportation of the biological material are not followed ( | |
| • Each smear on a microscope slide should be placed in the transportation container and transported to the laboratory accompanied by the relevant documentation including the investigation method requested | ||
| • Method rarely used now |
NAAT: nucleic acid amplification test.
Direct laboratory methods for HSV diagnosis
| Immunopreoxidase staining | Swab | Middle (80%) | High (90%) | Reagent cost | Fresh vesicles | |
| Smears from lesions | ||||||
| Rapid (<4 hours possible) | Suboptimal sensitivity | |||||
| Smear or vesicular fluid of exudate from base of vesicle | ||||||
| Does no require the integrity of the specimen | ||||||
| Typing possible | ||||||
| | Capture ELISA | Swab | High (Genital ulcer: >95%) | High (62-100%) | | Fresh vesicles |
| Vesicular fluid or exudate from base of vesicle | No viral typing | |||||
| | Rapid test device | Swab | Unknown | Unknown | Point-of-care testing | Not yet evaluated |
| Vesicular fluid or exudate from base of vesicle | ||||||
| HSV isolation susceptible cells | Swab | Low to high depending of the clinical context | High (≈100%) | Allows virus isolation | Less sensitive than PCR | |
| Skin lesions | ||||||
| Sample storage and transport conditions influence sensitivity | ||||||
| Classically, “gold standard” method | ||||||
| Vesicular fluid or exudate from base of vesicle | Vesicular content :>90% | |||||
| ( | ||||||
| Currently, “preferred” test (CDC 2010) | ||||||
| Ulcer : 95% | ||||||
| Swab : 70%-80% | ||||||
| Labor-intensive | ||||||
| Mucosal sample without lesions Biopsies | Mucosa without lesion: 30% | Simplicity of sampling | ||||
| Expensive | ||||||
| Virus typing | Specialized laboratories | |||||
| Resistance | Results in 2/7 days | |||||
| Phenotype testing* | Arrangement with laboratory necessary | |||||
| Conjunctival/corneal smear | ||||||
| Neonates | ||||||
| HSV DNA detection and/or quantitation by NAAT, including in-house classical PCR, real-time PCR and commercial assays | Swab | Highest | High. | High sensitivity. | Only in specialized laboratories | |
| Skin lesions | (98%) | (≈100%) | ||||
| Vesicular fluid or exudate from base of vesicle | Containment of potential cross-contamination important | Currently, “preferred” test (CDC 2010) | Not standardized | |||
| Allows virus detection and typing in the same test | Not validated for all samples | |||||
| Mucosal sample without lesions | ||||||
| Risk of contamination (PCR) | ||||||
| May be relatively expensive (real-time PCR) | ||||||
| Rapid | ||||||
| Aqueous/vitreous humor | May be automated. | |||||
| Labor efficient | Routine resistance genotyping not available | |||||
| Cortico-spinal fluid | ||||||
| Result within 24–48 h, possibly in <3 hours | ||||||
| Blood | ||||||
| Resistance genotyping | ||||||
| Method of choice for CSF | ||||||
| Rapid amplification | ||||||
| Quantitative analysis | ||||||
| Reduced risk of contamination | ||||||
| Method of choice for skin lesions | ||||||
| Tzanck smears | Skin/mucosal lesions | Low | Low | Inexpensive | Fresh lesions | |
| Papanicolaou or Romanovsky stain | low sensitivity and no distinction between HSV-1 and HSV-2, nor between HSV and varicella zoster virus infection | |||||
| Biopsies | ||||||
| Conjunctival/corneal smears | ||||||
| | Detection of infected cells by direct immunoflorescence | Smears, Tissue section Smear from base of vesicle | Middle | High | Inexpensive | Fresh vesicles |
| (Genital ulcer: 70-90% | (>95%) | Rapid (<4 hours possible) | Suboptimal sensitivity | |||
| Asymptomatic : < 40-50%) | ||||||
| Typing possible | Time-consuming | |||||
| Labor-intensive | ||||||
| Not standardized |
*The detection of resistance mutations to anti-herpetic drugs (aciclovir) by HSV drug resistance genotyping is likely to supplant phenotypic testing in the next few years.
NAAT: nucleic acid amplification test; CDC : Centers for Disease Control.
Recommended sampling sites, type of sample and preferred diagnostic methods for genital herpes, adapted from Domeika and colleagues[9]
| Vesicule on skin and mucous membranes Ulcer | NAAT; viral culture; antigen detection* |
| Urethra (male) | NAAT; antigen detection* |
| Cervix/urethra (female) | NAAT; antigen detection* |
| Urine (men and women) | NAAT; viral culture |
| Vulva/vagina (prepubertal girls) | NAAT |
| Vagina (women after hysterectomy) |
*Viral antigen detection by direct immunofluorescence on smears or enzyme immunoassay on swabs may offer a rapid diagnostic alternative in settings where culture or molecular diagnosis are not available.
NAAT: nucleic acid amplification test.
Indirect serological assays for HSV diagnosis
| Western blot HSV-1 | Serum | ≈100% | ≈100% | Reference (“gold standard”) test proposed by University of Washington (USA) | Not commercially available | |
| Expensive | ||||||
| [UW-WB] | ||||||
| Specific of HSV-1 and HSV-2 | 2–3 days for results | |||||
| Western blot HSV-2 | ||||||
| Detect early sero-conversion to HSV-2 in patient with prior HSV-1 infection | ||||||
| Earliest sero-conversion : 13 days | ||||||
| Monoclonal antibody-blocking EIA | Serum’ | ≈100% | ≈100% | Reference (“gold standard”) test proposed by the Central Public Health Laboratory in the United Kingdom; 98% concordance with WU-WB | Not commercially available | |
| (African sera : 98%) | (African sera : 97%) | |||||
| Distinguish between HSV-1 and HSV-2 | ||||||
| ELISA | Serum | 93–98% | 93–99% | Commercially available | May lack of sensitivity and specificity | |
| Distinguish between HSV-1 and HSV-2 | Lack of specific on African sera | |||||
| Immuno-filtration | Serum Capillaryblood | 96% | 87–98% | Less expensive than Western blot | Commercially available only for HSV-2 | |
| Accurate results rapidly (6 min.) | Expensive | |||||
| Not for large volume screening | ||||||
| Easily to carry out | ||||||
| Detects seroconversion within 4 weeks of presentation of 80% of patients with HSV-2 episodes | Complexity nonwaived (moderate) |
ELISA:Enzyme-linked immunosorbent assay; EIA: Enzyme immunoassay;
UW-WB: Western blot test developed at the University of Washington.
Commercially available serological assays for HSV diagnosis approved by the Food and Drug Administration (US) (FDA, 2013)
| | | | | ||||
|---|---|---|---|---|---|---|---|
| Biokit | Point of care | Heparinized capillary whole blood, serum | NA | NA | 93%-96% | 95%-98% | |
| Focus Diagnostics | Western blot with recombinant proteins | Serum | 99.3% | 95.1% | 97.3% | 93.7% | |
| Focus Diagnostics | ELISA | Serum | 91.2%-96% | 92. 3%-95.2% | 96.1% -100% | 97.0%-96.1% | |
| Trinity Biotech | ELISA | Serum | 87.9%-87.7% | 100%-98.2% | 96.7%-100% | 90.3%-91.5% | |
| Diasorin | ELISA | Serum | 96.9%-98.7% | 91.3%-96.8% | 98.1%-94.8% | 98.0%-97.3% | |
| Zeus Scientific | ELISA | Serum | 96.8% | 97.1% | 98.8% | 100% | |
| Biorad | Luminex | Serum, lithium heparini plasma, EDTA plasma | 100%-100% | 98. 3%-97.4% | 99.4%-100% | 100%-100% | |
| Roche Diagnostics | Chemiluminescence | Serum, lithium heparin plasma, EDTA plasma | 94.2%-91.0% | 90. 3%-95.7% | 93.6%-97.8% | 98.7%-98.7% | |
NA: Not Applicable.
Virological and serological approach to HSV-2 diagnosis in the presence and absence of genital lesions, adapted from Gupta and colleagues[5]
| Positive | Positive or negative | Negative | Acute HSV-2 infection | |
| Repeat HSV-2-specific serology within 15-30 days | ||||
| | Positive | Positive or negative | Positive | Recurrent HSV-2 infection with HSV-2 infection acquired at least 6 weeks ago |
| NA | Negative | Negative | Patients at risk for acquiring orolabial or genital HSV-1 infection and/or HSV-2 infections | |
| | NA | Positive | Negative | Patients at risk for acquiring orolabial or genital HSV-2 infections |
| | NA | Positive | Positive | HSV-1 and HSV-2 past-infections |
| Positive | Positive or negative | Positive | Recurrent HSV-2 infection | |
| Negative | Negative | Positive | Possible recurrent HSV-2 infection Other potential causes of genital ulcerative disease should be considered |
NA: Not applicable.
Indications of type specific serology
| Asymptomatic patients | Not routinely recommended |
| Confirmation of clinical diagnosis | HSV-2 antibodies are supportive of a diagnosis of genital herpes. |
| History of recurrent or atypical genital disease with direct virus detection negative | HSV-1 antibodies do not differentiate between genital and oropharyngeal infection. |
| Counseling of HSV-2 IgG-negative, HSV-1 IgG-positive patients should take into account that HSV-1 is an uncommon cause of recurrent genital disease. | |
| First-episode genital herpes | Differentiation between primary and established infection guides counseling and management. |
| At the onset of symptoms, the absence of HSV IgG against the virus type detected in the genital lesion is consistent with a primary infection. | |
| Seroconversion should be demonstrated at follow-up. | |
| Partner with genital herpes | Knowledge of infection status can guide patient education and counseling if the partnership is discordant. |
| Pregnant women | Not routinely recommended. |
| HSV-1 and/or HSV-2 seronegative women should be counseled about strategies to prevent a new infection with either virus type during pregnancy. | |
| HIV infected patients | Not routinely recommended. |
| Although HSV-2 seropositivity increases the risk of HIV transmission and frequent HSV recurrences augment HIV replication, there is limited evidence to inform the management of HSV-2 co-infection in HIV-infected patients without symptoms of genital herpes. | |
| Limited data suggest an increased risk of perinatal HIV transmission among HSV-2 seropositive HIV-infected women. As the evidence is not consistent, testing of HIV-positive pregnant women is not routinely recommended. |
Molecular changes associated with anti-herpetic drugs resistance in thymidine kinase (TK) and DNA polymerase (DNA pol) genes of Herpes simplex virus type 1 (HSV-1) and type 2 (HSV-2) according to amino acid mutations, stop codon and nucleotide insertion or deletion reported in the literature[29-34]
| R51W, Y53P/D/H, D55N, G56S/V, P57H, K62N, H58R/L, G59R/Y/W, G61V, K62N, T63A/I/S, T64A/S, T65N, E83K, P84S, V87H, T103P, Q104H, H105P, Q125E/L, M128A/F, G129D, G144N/R, A156V, D162A, R163H/C, A167V, A168T, L170P, Y172C/F, P173L/R, A174P, A175V, R176Q, L178R, S181N, Q185R, V187M, A189V, G200C/D, T201P, G206R, L208H, R216C/H/S, R220C/H, R222C/H, L227F, Y239S, T245M/P, T287M, L297S, L315S, C336Y, L364P | Y53, S74, E95, T103, Q104, R176, Q250, Q261, R281, L341, C336, Q342, L364, A375 | 133-136, 153-155, 180-183, 184-187 430-436, 437-438,455-458, 460-464, 464-465, 548-553,615-619, 666-669, 853-856, 878-880, 896-900, 1061-1064 | | ||
| R34C, R51W, G56E, G59P, P85S, N100H, Q105P, T131P, R177W, S182D, S182N, V192M, T202A, R217H, R221H, R221C, R223H, L228I,D229H, R272V, P273S, D274R, T288M,C337Y | A28, L69, D137, Q222, Y240, T264 | 215-217, 219-222222, 439-440, 452, 467, 519-521, 551-556, 586-591, 626-628, 808-812 | R272V + P273S + D74R | ||
| P85S + N100H + V192M | |||||
| D368A, E370A, V462A, K532T, Y557S, Q570R, D581A, G597K/D, A605V, Q618H, Y696H, R700G, L702H, V714M, V715M, F716L, A719V/T, S724N,E771Q, L774F, L778M, D780N, L782I, P797T, E798K, L802F, V183M, N815L/S/T/V/Y/E, Y818C, T821M, G841S/C, R842S, S889A, F891C/Y, V892S, D907V, I922N/T, Y941H, V958L, R959H, N961K, D1070N | | | A719V + V904M | ||
| A327T + A605V | |||||
| T566A + A605V | |||||
| | N494S, A605V, F716L, A719V,A719T, S724N, L778M, D780N, L782I, E798K, F891C, D907V, V958L | | | A719V + V904M | |
| A327T + A605V | |||||
| S724N + A916V | |||||
| | A136T, R700H, R700M, S724N, T821M, L1007H, I1028T | | | | |
| | A605V, F716L, A719V, A719T, S724N, L778M, D780N, L782I, E798K, F891C, D907V, V958L | | | A719V + V904M | |
| A327T + A605V | |||||
| | T821M | | | | |
| E250Q, R628C, E678G, A724V, S725G, D785N, D912N/V | | | | ||
| | S725G, S729N, L783M, D912V | | | | |
| S725G, D912V |
The number is the amino acid position in the protein. The two letters correspond respectively to the wild type amino acid and the mutated amino acid.
Nucleotide numbering TK: thymidine kinase, DNA pol: DNA polymerase, ACV: aciclovir, FCV: foscarnet, CDV: cidofovir.