| Literature DB >> 24860821 |
Kh Dhanachandra Singh1, Ajay Jajodia2, Harpreet Kaur2, Ritushree Kukreti2, Muthusamy Karthikeyan1.
Abstract
Renin-angiotensin system (RAS) polymorphisms have been studied as candidate risk factors for hypertension with inconsistent results, possibly due to heterogeneity among various genetic and environmental factors. A case-control association study was conducted to investigate a possible involvement of polymorphisms of three RAS genes: AGT M235T (rs699), ACE I/D (rs4340) and G2350A (rs4343), and AGTR1 A1166C (rs5186) in essential hypertensive patients. A total of 211 cases and 211 controls were recruited for this study. Genotyping was performed using PCR-RFLP method. The genotype and allele distribution of the M235T variant differed significantly in hypertensives and normotensives (OR-CI = 2.62 (1.24-5.76), P = 0.006; OR-CI = 0.699 (0.518-0.943), P = 0.018), respectively. When the samples were segregated based on sex, the 235TT genotype and T allele were predominant in the female patients (OR-CI = 5.68 (1.60-25.10), P = 0.002; OR-CI = 0.522 (0.330-0.826), P = 0.005) as compare to the male patients (OR-CI = 1.54 (1.24-5.76), P = 0.34; OR-CI = 0.874 (0.330-0.826), P = 0.506), respectively. For ACE DD variant, we found overrepresentation of "I"-allele (homozygous II and heterozygous ID) in unaffected males which suggest its protective role in studied population (OR-CI = 0.401 (0.224-0.718); P = 0.0009). The M235T variant of the AGT is significantly associated with female hypertensives and ACE DD variant could be a risk allele for essential hypertension in south India.Entities:
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Year: 2014 PMID: 24860821 PMCID: PMC4016835 DOI: 10.1155/2014/538053
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Sample size, sex ratio, and basic characteristics (means, standard deviation) of study sample.
| Cases ( | Controls ( | |
|---|---|---|
|
| 211 | 211 |
| Male | 109 | 130 |
| Female | 102 | 81 |
| Age (years), male | 54.56 ± 13.04 | 43.71 ± 14.17 |
| Age (years), female | 54.37 ± 12.25 | 43.90 ± 13.57 |
N: sample size.
Distributions of allele frequencies in cases and controls stratified gender wise.
| Gene | Allele | Minor allele | Freq. minor allele case | Freq. minor allele control |
| OR |
|
|---|---|---|---|---|---|---|---|
|
| M/T | M | 0.254 | 0.327 | 5.527 | 0.699 (0.518–0.943) |
|
| Female | 0.226 | 0.358 | 7.797 | 0.522 (0.330–0.826) |
| ||
| Male | 0.280 | 0.308 | 0.443 | 0.874 (0.588–1.299) | 0.506 | ||
|
| I/D | I | 0.398 | 0.462 | 3.524 | 0.770 (0.586–1.012) | 0.060 |
| Female | 0.441 | 0.420 | 0.169 | 1.091 (0.719–1.656) | 0.681 | ||
| Male | 0.357 | 0.489 | 8.265 | 0.584 (0.404–0.844) |
| ||
|
| G/A | A | 0.173 | 0.164 | 0.136 | 1.070 (0.746–1.535) | 0.713 |
| Female | 0.172 | 0.210 | 0.866 | 0.780 (0.461–1.318) | 0.352 | ||
| Male | 0.174 | 0.135 | 1.444 | 1.357 (0.824–2.236) | 0.229 | ||
|
| A/C | C | 0.384 | 0.401 | 0.244 | 0.933 (0.708–1.230) | 0.622 |
| Female | 0.363 | 0.414 | 0.985 | 0.807 (0.529–1.233) | 0.321 | ||
| Male | 0.404 | 0.392 | 0.064 | 1.049 (0.726–1.515) | 0.800 |
χ 2: Chi-square with 1 degree of freedom; OR: odds ratio; *P < 0.05: statically significant (alpha value 0.05/4).
Distribution of genotype frequencies of RAS gene polymorphisms in patients and control subjects.
| SNPs | Genotype | Case % ( | Control % ( | OR | 95% CI |
|
|---|---|---|---|---|---|---|
|
| MM | 6.16 | 14.22 | Ref | ||
| MT | 38.39 | 36.97 | 2.40 | 1.11–5.37 | 0.016 | |
| TT | 55.45 | 48.82 | 2.62 | 1.24–5.76 |
| |
| Male | MM | 8.26 | 12.31 | Ref | ||
| MT | 39.45 | 36.92 | 1.59 | 0.59–4.52 | 0.320 | |
| TT | 52.29 | 50.77 | 1.54 | 0.58–4.25 | 0.340 | |
| Female | MM | 3.92 | 17.28 | Ref | ||
| MT | 37.25 | 37.04 | 4.43 | 1.21–20.09 | 0.011 | |
| TT | 58.82 | 45.68 | 5.68 | 1.60–25.10 |
| |
|
| ||||||
|
| II | 18.96 | 24.17 | Ref | ||
| ID | 41.71 | 44.08 | 1.21 | 0.71–2.07 | 0.467 | |
| DD | 39.34 | 31.75 | 1.58 | 0.90–2.76 | 0.087 | |
| Male | II | 17.43 | 23.08 | Ref | ||
| ID | 36.70 | 51.54 | 0.94 | 0.45–2.02 | 0.870 | |
| DD | 45.87 | 25.38 | 2.39 | 1.09–5.27 | 0.020 | |
| Female | II | 20.59 | 25.93 | Ref | ||
| ID | 47.06 | 32.10 | 1.85 | 0.80–4.28 | 0.117 | |
| DD | 32.35 | 41.98 | 0.97 | 0.42–2.25 | 0.940 | |
|
| ||||||
|
| GG | 71.09 | 72.51 | Ref | ||
| GA | 23.22 | 22.27 | 1.06 | 0.65–1.73 | 0.793 | |
| AA | 5.69 | 5.21 | 1.11 | 0.43–2.88 | 0.805 | |
| Male | GG | 71.56 | 77.69 | Ref | ||
| GA | 22.02 | 17.69 | 1.51 | 0.42–5.66 | 0.472 | |
| AA | 6.42 | 4.62 | 1.35 | 0.67–2.71 | 0.359 | |
| Female | GG | 70.59 | 64.20 | Ref | ||
| GA | 24.51 | 29.63 | 0.75 | 0.37–1.54 | 0.400 | |
| AA | 4.90 | 6.17 | 0.72 | 0.16–3.32 | 0.620 | |
|
| ||||||
|
| AA | 41.71 | 40.28 | Ref | ||
| AC | 39.81 | 39.34 | 0.98 | 0.62–1.53 | 0.917 | |
| CC | 18.48 | 20.38 | 0.88 | 0.50–1.53 | 0.622 | |
| Male | AA | 37.61 | 40.77 | Ref | ||
| AC | 44.04 | 40.00 | 1.03 | 0.47–2.24 | 0.540 | |
| CC | 18.35 | 19.23 | 1.19 | 0.65–2.19 | 0.930 | |
| Female | AA | 46.08 | 39.51 | Ref | ||
| AC | 35.29 | 38.27 | 0.79 | 0.39–1.61 | 0.484 | |
| CC | 18.63 | 22.22 | 0.72 | 0.30–1.70 | 0.409 | |
N: sample size; OR: odds ratio; CI: confidence interval; Ref: reference; *P < 0.05: statically significant.
Distribution of RAS gene polymorphisms (dominant and recessive model) in patient and control subjects.
| SNPs | Model | TEST | Case ( | Control ( | OR | 95% CI |
|
|---|---|---|---|---|---|---|---|
|
| MM + MT versus TT | DOM | 94/117 | 108/103 | 0.766 | 0.513–1.144 | 0.173 |
| MM versus MT + TT | REC | 13/198 | 30/181 | 0.396 | 0.184–0.813 |
| |
| Male | MM + MT versus TT | DOM | 52/57 | 64/66 | 0.941 | 0.547–1.616 | 0.814 |
| MM versus MT + TT | REC | 9/100 | 16/114 | 0.641 | 0.239–1.624 | 0.308 | |
| Female | MM + MT versus TT | DOM | 42/60 | 44/37 | 0.589 | 0.313–1.106 | 0.077 |
| MM versus MT + TT | REC | 04/98 | 14/67 | 0.062 | 0.015–0.185 | 0.000 | |
|
| |||||||
|
| II + ID versus DD | DOM | 128/83 | 144/67 | 0.718 | 0.471–1.092 | 0.104 |
| II versus ID + DD | REC | 40/171 | 51/160 | 0.734 | 0.447–1.201 | 0.193 | |
| Male | II + ID versus DD | DOM | 59/50 | 97/33 | 0.401 | 0.224–0 .718 |
|
| II versus ID + DD | REC | 19/90 | 30/100 | 0.704 | 0.349–1.397 | 0.282 | |
| Female | II + ID versus DD | DOM | 69/33 | 47/34 | 1.513 | 0.789–2.898 | 0.180 |
| II versus ID + DD | REC | 21/81 | 21/60 | 0.741 | 0.350–1.569 | 0.394 | |
|
| |||||||
|
| AA + AG versus GG | DOM | 61/150 | 58/153 | 1.073 | 0.686–1.677 | 0.746 |
| AA versus AG + GG | REC | 12/199 | 11/200 | 1.096 | 0.432–2.813 | 0.830 | |
| Male | AA + AG versus GG | DOM | 31/78 | 29/101 | 1.384 | 0.738–2.596 | 0.276 |
| AA versus AG + GG | REC | 7/102 | 6/124 | 1.418 | 0.394–0.273 | 0.540 | |
| Female | AA + AG versus GG | DOM | 30/72 | 29/52 | 0.747 | 0.383–1.462 | 0.358 |
| AA versus AG + GG | REC | 05/97 | 05/76 | 0.784 | 0.174–0.542 | 0.707 | |
|
| |||||||
| A1166C | CC + CT versus TT | DOM | 123/88 | 126/85 | 0.943 | 0.628–1.416 | 0.767 |
| CC versus CT + TT | REC | 39/172 | 43/168 | 0.886 | 0.530–1.477 | 0.623 | |
| Male | CC + CA versus AA | DOM | 68/41 | 77/53 | 1.142 | 0.656–1.992 | 0.619 |
| CC versus CA + AA | REC | 20/89 | 25/105 | 0.944 | 0.464–1.903 | 0.862 | |
| Female | CC + CA versus AA | DOM | 55/47 | 49/32 | 0.764 | 0.405–1.439 | 0.373 |
| CC versus CA + AA | REC | 19/83 | 18/63 | 0.801 | 0.365–1.767 | 0.548 | |
DOM: dominant model; REC: recessive model; N: sample size; OR: odds ratio; CI: confidence interval; *P < 0.05: statically significant.
Figure 1Interaction dendrogram for the four polymorphisms of RAS gene modeled by the MDR method. A red or orange line indicates synergistic or nonadditive relationship yellow line, independency, or additivity.
Summary of MDR analysis. MDR analysis reveals that combination of ACE I/D and AGT M235T could be a high risk for the prevalence of the EHT.
| Model | Training bal. acc. (%) | Testing bal. acc. (%) | Cross-validation consistency | Prediction error |
|---|---|---|---|---|
| Sex | 0.550 | 0.528 | 08/10 | 0.450 |
| I/D, M235T |
|
|
|
|
| I/D, M235T, and A1166C | 0.655 | 0.569 | 6/10 | 0.345 |
| I/D, M235T, A1166C, and sex | 0.710 | 0.602 | 7/10 | 0.290 |
Figure 2Distribution of high-risk (dark shaded) and low-risk (light shaded) genotypes among the markers studied. The summary of the distribution illustrates the hypertensives (left bars) and normotensives (right bars) for each genotype combination. Asterisk (∗) indicates the significant difference between cases and control subjects.