| Literature DB >> 24834432 |
Marta Muñoz1, Asli Uyar2, Eva Correia1, Claire Ponsart3, Catherine Guyader-Joly4, Daniel Martínez-Bello5, Brigitte Marquant-Le Guienne3, Alfonso Fernandez-Gonzalez6, Carmen Díez1, Jose Nestor Caamaño1, Beatriz Trigal1, Patrice Humblot7, Susana Carrocera1, David Martin1, Emre Seli8, Enrique Gomez1.
Abstract
We analyzed embryo culture medium (CM) and recipient blood plasma using Fourier transform infrared spectroscopy (FTIR) metabolomics to identify spectral models predictive of pregnancy outcome. Embryos collected on Day 6 from superovulated cows in 2 countries were individually cultured in synthetic oviduct fluid medium with BSA for 24 h before embryo transfer. Spent CM, blank controls, and plasma samples (Day 0 and Day 7) were evaluated using FTIR. The spectra obtained were analyzed. The discrimination capability of the classifiers was assessed for accuracy, sensitivity (pregnancy), specificity (nonpregnancy), and area under the ROC curve (AUC). Endpoints considered were Day 60 pregnancy and birth. High AUC was obtained for Day 60 pregnancy in CM within individual laboratories (France AUC = 0.751 ± 0.039, Spain AUC = 0.718 ± 0.024), while cumulative data decreased the AUC (AUC = 0.604 ± 0.029). Predictions for CM at birth were lower than Day 60 pregnancy. Predictions with plasma at birth improved cumulative over individual results (Day 0: France AUC = 0.690 ± 0.044; Spain AUC < 0.55; cumulative AUC = 0.747 ± 0.032). Plasma generally predicted pregnancy and birth better than CM. These first results show that FTIR metabolomics could allow the identification of embryos and recipients with improved pregnancy viability, which may contribute to increasing the efficiency of selection schemes based on ET.Entities:
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Year: 2014 PMID: 24834432 PMCID: PMC4009133 DOI: 10.1155/2014/608579
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
In vitro development and pregnancy rates of Day 6 in vivo embryos that recovered from superovulated, artificially inseminated cows in UNCEIA (France) and UTE-Bos (Spain) followed by a 24 h individual culture step in SOF + 6 g BSA/L prior to embryo transfer.
| Development rates | |||||
|---|---|---|---|---|---|
| Laboratory |
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| Day 60 pregnancy | Calving |
| France | 27 | 26 | 26 | 17 (65%) | 16 (61%) |
| Spain | 24 | 23 | 23 | 13 (56%) | 12 (52%) |
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| Total | 51 | 49 | 49 | 30 (59%) | 28 (55%) |
N1: early embryos, morulae, flushed and cultured in vitro.
N2: embryos developed to a transferable stage after a 24 h in vitro culture.
N3: embryos transferred to recipients (used once for ET).
France: all embryos were transferred in a single herd (n = 5 bulls).
Spain: embryos transferred in 2 herds (n = 4 bulls).
Day 60 pregnancy and birth predictions on PCA transformed spectra data derived from metabolomic analysis of spent culture medium (CM) of Day 6 in vivo embryos cultured in vitro for 24 h and transferred fresh to recipients on Day 7 in two laboratories (UNCEIA, France, and UTE-Bos, Spain).
| Laboratory | Sample analyzed | Pregnancy endpoint |
| Positive | Negative |
| PCA | Accuracy | Sensitivity | Specificity | AUC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| France | Embryo CM | Day 60 | 26 | 16 | 10 | 3 | + | 74.6 ± 5.5 | 75.0 ± 4.2 | 74.0 ± 8.4 | 0.751 ± 0.039 |
| Birth | 26 | 14 | 12 | 3 | + | 68.5 ± 7.6 | 69.3 ± 7.6 | 67.5 ± 9.2 | 0.655 ± 0.075 | ||
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| Spain | Embryo CM | Day 60 | 23 | 13 | 10 | 3 | + | 74.8 ± 3.9 | 67.7 ± 7.1 | 84.0 ± 6.9 | 0.718 ± 0.024 |
| Birth | 23 | 12 | 11 | 3 | + | 66.9 ± 4.2 | 58.3 ± 6.8 | 76.3 ± 4.7 | 0.625 ± 0.032 | ||
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| France + Spain | Embryo CM | Day 60 | 49 | 29 | 20 | 3 | − | 64.4 ± 1.4 | 57.5 ± 2.7 | 74.4 ± 5.8 | 0.604 ± 0.029 |
| Birth | 49 | 26 | 23 | 3 | − | <0.6 | |||||
N: culture medium or plasma samples analyzed. Positive: samples that correspond to pregnancy/birth. Negative: samples that do not correspond to pregnancy/birth.
k: adjustable model parameter of k-nearest neighbor classification algorithm.
PCA: principal component analysis (+: applied; −: did not improve the results when applied).
Day 60 pregnancy and birth predictions on PCA transformed spectra data derived from metabolomic analysis of plasma recovered on Day 0 and Day 7 from recipients prior to transfer on Day 7 of embryos that had been cultured in vitro for 24 h in two laboratories (UNCEIA, France, and UTE-Bos, Spain).
| Laboratory | Plasma analyzed | Pregnancy endpoint |
| Positive | Negative |
| PCA | Accuracy | Sensitivity | Specificity | AUC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| France | Day 0 | Day 60 | 25 | 15 | 10 | 3 | − | 59.6 ± 4.4 | 58.7 ± 6.9 | 61.0 ± 5.7 | 0.657 ± 0.033 |
| Birth | 25 | 13 | 12 | 3 | − | 66.4 ± 7.1 | 73.1 ± 15.5 | 59.1 ± 9.2 | 0.690 ± 0.044 | ||
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| France | Day 7–Day 0 | Day 60 | 25 | 15 | 10 | 3 | − | <0.6 | |||
| Birth | 25 | 13 | 12 | 3 | − | 72.0 ± 3.8 | 69.7 ± 10.2 | 75.0 ± 8.8 | 0.789 ± 0.032 | ||
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| Spain | Day 0 | Day 60 | 23 | 13 | 10 | 1 | − | 69.1 ± 5.2 | 72.8 ± 9.1 | 62.0 ± 6.3 | 0.671 ± 0.067 |
| Birth | 23 | 12 | 11 | 1 | − | <0.55 | |||||
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| Spain | Day 7–Day 0 | Day 60 | 23 | 13 | 10 | 3 | + | 68.3 ± 9.6 | 73.8 ± 15.5 | 61.0 ± 3.2 | 0.639 ± 0.047 |
| Birth | 23 | 12 | 11 | 3 | + | 67.8 ± 3.0 | 69.2 ± 5.6 | 66.3 ± 4.4 | 0.662 ± 0.021 | ||
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| France + Spain | Day 0 | Day 60 | 48 | 28 | 20 | 1 | + | 74.2 ± 1.1 | 78.2 ± 3.1 | 70.7 ± 1.1 | 0.766 ± 0.014 |
| Birth | 48 | 25 | 23 | 1 | + | 72.1 ± 2.0 | 79.2 ± 7.3 | 64.4 ± 7.0 | 0.747 ± 0.032 | ||
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| France + Spain | Day 7–Day 0 | Day 60 | 48 | 28 | 20 | 3 | + | <0.6 | |||
| Birth | 48 | 25 | 23 | 3 | + | 69.8 ± 6.0 | 58.4 ± 3.4 | 82.2 ± 9.5 | 0.657 ± 0.033 | ||
N: culture medium or plasma samples analyzed. Positive: samples that correspond to pregnancy/birth. Negative: samples that do not correspond to pregnancy/birth.
k: adjustable model parameter of k-nearest neighbor classification algorithm.
PCA: principal component analysis (+: applied; −: did not improve the results when applied).
Day 7 plasma alone (not represented) yields <0.6 AUC.
Figure 1Principal component analysis (PCA) of spectra obtained from Day 0 plasma. The percentages of variability represented by the first three principal components are displayed across PC nos. 1, 2, and 3 on X, Y, and Z axes, respectively.