Literature DB >> 24826170

2-Amino-5-nitro-pyridinium hydrogen oxalate.

M Ambrose Rajkumar1, S Stanly John Xavier2, S Anbarasu1, Prem Anand Devarajan1, M NizamMohideen3.   

Abstract

In the cation of the title mol-ecular salt, C5H6N3O2 (+)·C2HO4 (-), the dihedral angle between the aromatic ring and the nitro group is 3.5 (3)°; in the anion, the dihedral angle between the CO2 and CO2H planes is 10.5 (2)°. In the crystal, the anions are linked into [100] chains by O-H⋯O hydrogen bonds. The cations cross-link the chains by way of N-H⋯O hydrogen bonds and the structure is consolidated by C-H⋯O inter-actions.

Entities:  

Year:  2014        PMID: 24826170      PMCID: PMC3998560          DOI: 10.1107/S160053681400525X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related pyridine derivatives, see: Babu et al. (2014 ▶); Anderson et al. (2005 ▶); Karle et al. (2003 ▶). For simple organic–inorganic salts containing strong inter­molecular hydrogen bonds, see: Fu et al. (2011 ▶); Sethuram et al. (2013a ▶,b ▶); Shihabuddeen Syed et al. (2013 ▶); Showrilu et al. (2013 ▶); Huq et al. (2013 ▶). For the structure of oxalic acid, see: Derissen & Smith (1974 ▶). For graph-set analysis, see: Bernstein et al.(1995 ▶).

Experimental

Crystal data

C5H6N3O2 +·C2HO4 − M = 229.16 Triclinic, a = 5.5609 (2) Å b = 9.2012 (4) Å c = 9.2305 (4) Å α = 90.245 (2)° β = 98.500 (2)° γ = 100.038 (2)° V = 459.74 (3) Å3 Z = 2 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.35 × 0.30 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.950, T max = 0.957 10142 measured reflections 1615 independent reflections 1417 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.110 S = 1.07 1615 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681400525X/jj2183sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681400525X/jj2183Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681400525X/jj2183Isup3.cml CCDC reference: 990527 Additional supporting information: crystallographic information; 3D view; checkCIF report
C5H6N3O2+·C2HO4Z = 2
Mr = 229.16F(000) = 236
Triclinic, P1Dx = 1.655 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.5609 (2) ÅCell parameters from 2794 reflections
b = 9.2012 (4) Åθ = 2.4–31.1°
c = 9.2305 (4) ŵ = 0.15 mm1
α = 90.245 (2)°T = 293 K
β = 98.500 (2)°Block, colourless
γ = 100.038 (2)°0.35 × 0.30 × 0.30 mm
V = 459.74 (3) Å3
Bruker Kappa APEXII CCD diffractometer1615 independent reflections
Radiation source: fine-focus sealed tube1417 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 0.1000 pixels mm-1θmax = 25.0°, θmin = 2.2°
ω and φ scansh = −6→6
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)k = −10→10
Tmin = 0.950, Tmax = 0.957l = −10→10
10142 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0559P)2 + 0.2329P] where P = (Fo2 + 2Fc2)/3
1615 reflections(Δ/σ)max < 0.001
153 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3486 (3)0.30577 (19)0.87248 (18)0.0302 (4)
C20.5136 (3)0.2468 (2)0.97783 (19)0.0361 (4)
H20.52060.26951.07680.043*
C30.6606 (3)0.1580 (2)0.9356 (2)0.0380 (4)
H30.77110.12011.00460.046*
C40.6446 (3)0.12349 (19)0.78639 (19)0.0338 (4)
C50.4879 (3)0.18053 (19)0.68547 (19)0.0332 (4)
H50.47960.15820.58630.040*
C60.8206 (3)0.61691 (18)0.66445 (17)0.0270 (4)
C71.0607 (3)0.64305 (19)0.59536 (17)0.0269 (4)
N10.3441 (3)0.26987 (16)0.72996 (15)0.0323 (4)
H10.24510.30570.66490.039*
N20.2009 (3)0.39211 (19)0.90933 (19)0.0408 (4)
N30.7996 (3)0.02858 (19)0.73614 (19)0.0450 (4)
O10.7803 (3)−0.0001 (2)0.60645 (19)0.0674 (5)
O20.9490 (4)−0.0148 (3)0.8270 (2)0.0882 (7)
O30.8197 (2)0.56345 (16)0.78510 (13)0.0410 (4)
O40.6388 (2)0.65291 (16)0.58166 (14)0.0409 (4)
H40.51590.63720.62260.061*
O51.2521 (2)0.62615 (16)0.68401 (13)0.0395 (4)
O61.0537 (2)0.67353 (14)0.46624 (12)0.0342 (3)
H2A0.114 (5)0.439 (3)0.842 (3)0.060 (7)*
H2B0.208 (4)0.407 (2)1.005 (3)0.051 (6)*
U11U22U33U12U13U23
C10.0316 (9)0.0336 (9)0.0242 (8)0.0042 (7)0.0024 (7)0.0058 (7)
C20.0424 (10)0.0428 (10)0.0217 (8)0.0085 (8)−0.0013 (7)0.0051 (7)
C30.0379 (10)0.0426 (10)0.0313 (9)0.0111 (8)−0.0070 (7)0.0093 (8)
C40.0324 (9)0.0333 (9)0.0351 (10)0.0082 (7)0.0002 (7)0.0039 (7)
C50.0387 (10)0.0347 (9)0.0253 (9)0.0074 (7)0.0010 (7)0.0015 (7)
C60.0212 (8)0.0392 (9)0.0216 (8)0.0085 (7)0.0027 (6)0.0034 (6)
C70.0205 (8)0.0390 (9)0.0221 (8)0.0082 (6)0.0022 (6)0.0029 (6)
N10.0344 (8)0.0391 (8)0.0231 (7)0.0118 (6)−0.0027 (6)0.0064 (6)
N20.0464 (10)0.0537 (10)0.0275 (9)0.0224 (8)0.0064 (7)0.0078 (7)
N30.0458 (10)0.0423 (9)0.0481 (11)0.0169 (8)−0.0003 (8)0.0007 (7)
O10.0832 (12)0.0683 (11)0.0567 (10)0.0355 (9)0.0044 (9)−0.0148 (8)
O20.0942 (14)0.1202 (17)0.0668 (12)0.0807 (14)−0.0069 (10)0.0069 (11)
O30.0313 (7)0.0720 (9)0.0249 (7)0.0190 (6)0.0090 (5)0.0143 (6)
O40.0193 (6)0.0712 (9)0.0359 (7)0.0150 (6)0.0074 (5)0.0221 (6)
O50.0192 (6)0.0751 (10)0.0257 (6)0.0139 (6)0.0014 (5)0.0102 (6)
O60.0257 (6)0.0560 (8)0.0234 (6)0.0122 (5)0.0054 (5)0.0099 (5)
C1—N21.315 (2)C6—O31.220 (2)
C1—N11.351 (2)C6—O41.268 (2)
C1—C21.413 (2)C6—C71.545 (2)
C2—C31.347 (3)C7—O61.222 (2)
C2—H20.9300C7—O51.2759 (19)
C3—C41.398 (3)N1—H10.8600
C3—H30.9300N2—H2A0.89 (3)
C4—C51.352 (2)N2—H2B0.89 (3)
C4—N31.448 (2)N3—O11.210 (2)
C5—N11.344 (2)N3—O21.211 (2)
C5—H50.9300O4—H40.8200
N2—C1—N1119.96 (16)O3—C6—C7120.04 (14)
N2—C1—C2122.16 (16)O4—C6—C7112.84 (13)
N1—C1—C2117.88 (16)O6—C7—O5126.27 (14)
C3—C2—C1120.31 (16)O6—C7—C6120.06 (14)
C3—C2—H2119.8O5—C7—C6113.64 (13)
C1—C2—H2119.8C5—N1—C1122.79 (14)
C2—C3—C4118.97 (16)C5—N1—H1118.6
C2—C3—H3120.5C1—N1—H1118.6
C4—C3—H3120.5C1—N2—H2A121.5 (16)
C5—C4—C3120.75 (17)C1—N2—H2B115.1 (15)
C5—C4—N3118.45 (16)H2A—N2—H2B123 (2)
C3—C4—N3120.79 (16)O1—N3—O2123.01 (19)
N1—C5—C4119.29 (16)O1—N3—C4119.28 (16)
N1—C5—H5120.4O2—N3—C4117.68 (17)
C4—C5—H5120.4C6—O4—H4109.5
O3—C6—O4127.10 (15)
N2—C1—C2—C3179.55 (17)O3—C6—C7—O5−10.4 (2)
N1—C1—C2—C30.1 (3)O4—C6—C7—O5171.21 (16)
C1—C2—C3—C4−0.9 (3)C4—C5—N1—C1−0.1 (3)
C2—C3—C4—C51.3 (3)N2—C1—N1—C5−179.04 (16)
C2—C3—C4—N3179.89 (17)C2—C1—N1—C50.4 (3)
C3—C4—C5—N1−0.8 (3)C5—C4—N3—O1−1.9 (3)
N3—C4—C5—N1−179.43 (16)C3—C4—N3—O1179.50 (18)
O3—C6—C7—O6168.06 (17)C5—C4—N3—O2175.9 (2)
O4—C6—C7—O6−10.3 (2)C3—C4—N3—O2−2.7 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···O5i0.932.483.323 (2)152
C3—H3···O2ii0.932.373.296 (2)178
C5—H5···O1iii0.932.423.186 (2)140
C5—H5···O4iv0.932.442.970 (2)116
N1—H1···O4iv0.862.472.9770 (18)119
N1—H1···O6iv0.861.942.7697 (18)160
O4—H4···O5v0.821.642.4486 (16)170
N2—H2A···O3v0.89 (3)2.16 (3)2.959 (2)149 (2)
N2—H2A···O5v0.89 (3)2.36 (3)3.007 (2)130 (2)
N2—H2B···O3vi0.89 (3)1.99 (3)2.870 (2)173 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O5i 0.932.483.323 (2)152
C3—H3⋯O2ii 0.932.373.296 (2)178
C5—H5⋯O1iii 0.932.423.186 (2)140
C5—H5⋯O4iv 0.932.442.970 (2)116
N1—H1⋯O6iv 0.861.942.7697 (18)160
O4—H4⋯O5v 0.821.642.4486 (16)170
N2—H2A⋯O3v 0.89 (3)2.16 (3)2.959 (2)149 (2)
N2—H2A⋯O5v 0.89 (3)2.36 (3)3.007 (2)130 (2)
N2—H2B⋯O3vi 0.89 (3)1.99 (3)2.870 (2)173 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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