| Literature DB >> 23794964 |
A Shihabuddeen Syed1, K Rajarajan, M Nizammohideen.
Abstract
In the title salt, [Hg(NCS)(CH4N2S)3]Cl, the Hg(2+) ion is coordinated in a severely distorted tetra-hedral manner by three thio-urea groups and one thio-cyanate anion through their S atoms. The S-Hg-S angles vary widely from 87.39 (5) to 128.02 (4)°. Weak intra-molecular N-H⋯S hydrogen bonds are observed, which form S(6) ring motifs. In the crystal, the ions are linked by N-H⋯N and weak N-H⋯Cl inter-actions, generating a three-dimensional network.Entities:
Year: 2013 PMID: 23794964 PMCID: PMC3684862 DOI: 10.1107/S1600536813011847
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Hg(NCS)(CH4N2S)3]Cl | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 5125 reflections |
| θ = 2.4–31.2° | |
| µ = 10.83 mm−1 | |
| Block, colorless | |
| 0.30 × 0.25 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 5125 independent reflections |
| Radiation source: fine-focus sealed tube | 3579 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 31.8°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 38987 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5125 reflections | (Δ/σ)max = 0.001 |
| 155 parameters | Δρmax = 2.17 e Å−3 |
| 0 restraints | Δρmin = −1.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 1.2410 (5) | 0.1993 (3) | 0.42350 (17) | 0.0280 (8) | |
| C2 | 1.0389 (5) | 0.3016 (3) | 0.2771 (2) | 0.0321 (9) | |
| C3 | 0.7067 (6) | 0.0234 (3) | 0.43089 (19) | 0.0333 (9) | |
| C4 | 1.2429 (7) | −0.0184 (3) | 0.3691 (2) | 0.0498 (13) | |
| N1 | 1.3113 (5) | 0.1934 (3) | 0.37245 (16) | 0.0488 (12) | |
| H1A | 1.4063 | 0.2142 | 0.3671 | 0.059* | |
| H1B | 1.2628 | 0.1687 | 0.3439 | 0.059* | |
| N2 | 1.3169 (5) | 0.2370 (3) | 0.46633 (17) | 0.0445 (10) | |
| H2A | 1.4119 | 0.2575 | 0.4604 | 0.053* | |
| H2B | 1.2718 | 0.2414 | 0.5004 | 0.053* | |
| N3 | 1.0072 (6) | 0.3302 (3) | 0.32922 (19) | 0.0511 (11) | |
| H3A | 1.0352 | 0.3794 | 0.3383 | 0.061* | |
| H3B | 0.9582 | 0.2999 | 0.3547 | 0.061* | |
| N4 | 1.1131 (6) | 0.3476 (3) | 0.2386 (2) | 0.0541 (12) | |
| H4A | 1.1409 | 0.3967 | 0.2477 | 0.065* | |
| H4B | 1.1342 | 0.3287 | 0.2040 | 0.065* | |
| N5 | 0.6681 (6) | 0.0872 (3) | 0.46201 (18) | 0.0496 (11) | |
| H5A | 0.6676 | 0.0844 | 0.4999 | 0.060* | |
| H5B | 0.6430 | 0.1324 | 0.4448 | 0.060* | |
| N6 | 0.7440 (8) | −0.0438 (3) | 0.4576 (2) | 0.0667 (15) | |
| H6A | 0.7430 | −0.0458 | 0.4955 | 0.080* | |
| H6B | 0.7698 | −0.0865 | 0.4375 | 0.080* | |
| N7 | 1.2853 (8) | −0.0407 (4) | 0.4142 (2) | 0.0779 (18) | |
| Hg1 | 0.92567 (2) | 0.123362 (12) | 0.340864 (7) | 0.03933 (7) | |
| S1 | 1.05319 (12) | 0.15817 (7) | 0.43857 (4) | 0.0313 (2) | |
| S2 | 1.18864 (19) | 0.01386 (9) | 0.30317 (6) | 0.0529 (4) | |
| S3 | 0.70350 (17) | 0.02592 (8) | 0.35487 (5) | 0.0430 (3) | |
| S4 | 0.98486 (18) | 0.20568 (7) | 0.25448 (5) | 0.0411 (3) | |
| Cl1 | 0.66976 (13) | 0.27345 (7) | 0.39858 (4) | 0.0323 (2) |
| C1 | 0.025 (2) | 0.034 (2) | 0.0245 (18) | 0.0005 (16) | −0.0007 (15) | 0.0005 (16) |
| C2 | 0.029 (2) | 0.028 (2) | 0.040 (2) | −0.0008 (16) | 0.0019 (17) | −0.0016 (17) |
| C3 | 0.039 (3) | 0.029 (2) | 0.031 (2) | −0.0060 (18) | 0.0015 (18) | 0.0054 (17) |
| C4 | 0.060 (3) | 0.044 (3) | 0.046 (3) | 0.022 (3) | 0.006 (2) | −0.005 (2) |
| N1 | 0.032 (2) | 0.090 (3) | 0.0248 (18) | −0.021 (2) | 0.0068 (15) | −0.010 (2) |
| N2 | 0.036 (2) | 0.066 (3) | 0.0310 (19) | −0.019 (2) | 0.0034 (16) | −0.0137 (19) |
| N3 | 0.061 (3) | 0.037 (2) | 0.055 (3) | −0.013 (2) | 0.019 (2) | −0.0159 (19) |
| N4 | 0.076 (3) | 0.030 (2) | 0.057 (3) | −0.015 (2) | 0.024 (2) | −0.0046 (19) |
| N5 | 0.078 (3) | 0.034 (2) | 0.037 (2) | 0.007 (2) | 0.002 (2) | 0.0028 (18) |
| N6 | 0.123 (5) | 0.037 (3) | 0.040 (2) | 0.026 (3) | 0.002 (3) | 0.008 (2) |
| N7 | 0.110 (5) | 0.079 (4) | 0.044 (3) | 0.043 (4) | 0.005 (3) | 0.008 (3) |
| Hg1 | 0.04559 (12) | 0.04260 (11) | 0.02981 (9) | −0.01684 (8) | −0.00241 (7) | 0.00517 (7) |
| S1 | 0.0253 (5) | 0.0458 (6) | 0.0226 (4) | −0.0040 (4) | 0.0020 (4) | −0.0053 (4) |
| S2 | 0.0672 (10) | 0.0556 (8) | 0.0358 (6) | 0.0222 (7) | −0.0004 (6) | −0.0097 (6) |
| S3 | 0.0545 (8) | 0.0436 (7) | 0.0310 (5) | −0.0259 (6) | −0.0047 (5) | 0.0018 (5) |
| S4 | 0.0683 (8) | 0.0323 (6) | 0.0227 (5) | −0.0161 (6) | −0.0053 (5) | 0.0020 (4) |
| Cl1 | 0.0305 (5) | 0.0362 (5) | 0.0301 (5) | −0.0054 (4) | −0.0013 (4) | 0.0004 (4) |
| C1—N1 | 1.297 (5) | N2—H2B | 0.8600 |
| C1—N2 | 1.309 (5) | N3—H3A | 0.8600 |
| C1—S1 | 1.717 (4) | N3—H3B | 0.8600 |
| C2—N3 | 1.297 (6) | N4—H4A | 0.8600 |
| C2—N4 | 1.302 (6) | N4—H4B | 0.8600 |
| C2—S4 | 1.707 (4) | N5—H5A | 0.8600 |
| C3—N6 | 1.290 (6) | N5—H5B | 0.8600 |
| C3—N5 | 1.298 (6) | N6—H6A | 0.8600 |
| C3—S3 | 1.725 (4) | N6—H6B | 0.8600 |
| C4—N7 | 1.141 (7) | Hg1—S4 | 2.4250 (11) |
| C4—S2 | 1.647 (6) | Hg1—S3 | 2.4422 (12) |
| C4—S2 | 1.647 (6) | Hg1—S1 | 2.5162 (10) |
| N1—H1A | 0.8600 | Hg1—S2 | 2.9320 (14) |
| N1—H1B | 0.8600 | Hg1—S2 | 2.9320 (14) |
| N2—H2A | 0.8600 | ||
| N1—C1—N2 | 119.0 (4) | C2—N4—H4B | 120.0 |
| N1—C1—S1 | 123.3 (3) | H4A—N4—H4B | 120.0 |
| N2—C1—S1 | 117.7 (3) | C3—N5—H5A | 120.0 |
| N3—C2—N4 | 119.9 (4) | C3—N5—H5B | 120.0 |
| N3—C2—S4 | 123.4 (4) | H5A—N5—H5B | 120.0 |
| N4—C2—S4 | 116.7 (4) | C3—N6—H6A | 120.0 |
| N6—C3—N5 | 119.1 (4) | C3—N6—H6B | 120.0 |
| N6—C3—S3 | 119.6 (4) | H6A—N6—H6B | 120.0 |
| N5—C3—S3 | 121.4 (4) | S4—Hg1—S3 | 128.02 (4) |
| N7—C4—S2 | 177.9 (6) | S4—Hg1—S1 | 120.18 (4) |
| N7—C4—S2 | 177.9 (6) | S3—Hg1—S1 | 110.11 (4) |
| C1—N1—H1A | 120.0 | S4—Hg1—S2 | 87.39 (5) |
| C1—N1—H1B | 120.0 | S3—Hg1—S2 | 101.05 (5) |
| H1A—N1—H1B | 120.0 | S1—Hg1—S2 | 95.02 (4) |
| C1—N2—H2A | 120.0 | S4—Hg1—S2 | 87.39 (5) |
| C1—N2—H2B | 120.0 | S3—Hg1—S2 | 101.05 (5) |
| H2A—N2—H2B | 120.0 | S1—Hg1—S2 | 95.02 (4) |
| C2—N3—H3A | 120.0 | C1—S1—Hg1 | 106.69 (14) |
| C2—N3—H3B | 120.0 | C4—S2—Hg1 | 97.45 (18) |
| H3A—N3—H3B | 120.0 | C3—S3—Hg1 | 97.71 (15) |
| C2—N4—H4A | 120.0 | C2—S4—Hg1 | 108.55 (16) |
| N1—C1—S1—Hg1 | −14.6 (4) | S2—Hg1—S2—C4 | 0 (9) |
| N2—C1—S1—Hg1 | 166.6 (3) | N6—C3—S3—Hg1 | −115.5 (4) |
| S4—Hg1—S1—C1 | −32.03 (16) | N5—C3—S3—Hg1 | 66.4 (4) |
| S3—Hg1—S1—C1 | 161.59 (16) | S4—Hg1—S3—C3 | −160.34 (16) |
| S2—Hg1—S1—C1 | 57.87 (16) | S1—Hg1—S3—C3 | 4.69 (17) |
| S2—Hg1—S1—C1 | 57.87 (16) | S2—Hg1—S3—C3 | 104.27 (17) |
| S2—C4—S2—Hg1 | 0 (100) | S2—Hg1—S3—C3 | 104.27 (17) |
| S4—Hg1—S2—S2 | 0.00 (8) | N3—C2—S4—Hg1 | −17.9 (5) |
| S3—Hg1—S2—S2 | 0.00 (8) | N4—C2—S4—Hg1 | 163.4 (4) |
| S1—Hg1—S2—S2 | 0.00 (8) | S3—Hg1—S4—C2 | 138.25 (16) |
| S4—Hg1—S2—C4 | 150.5 (2) | S1—Hg1—S4—C2 | −25.45 (17) |
| S3—Hg1—S2—C4 | −81.2 (2) | S2—Hg1—S4—C2 | −119.74 (17) |
| S1—Hg1—S2—C4 | 30.5 (2) | S2—Hg1—S4—C2 | −119.74 (17) |
| H··· | ||||
| N1—H1 | 0.86 | 2.48 | 3.277 (4) | 155 |
| N1—H1 | 0.86 | 2.76 | 3.475 (5) | 142 |
| N2—H2 | 0.86 | 2.55 | 3.335 (4) | 152 |
| N3—H3 | 0.86 | 2.61 | 3.320 (5) | 141 |
| N4—H4 | 0.86 | 2.51 | 3.370 (5) | 175 |
| N5—H5 | 0.86 | 2.54 | 3.363 (4) | 161 |
| N5—H5 | 0.86 | 2.11 | 2.933 (7) | 160 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.48 | 3.277 (4) | 155 |
| N1—H1 | 0.86 | 2.76 | 3.475 (5) | 142 |
| N2—H2 | 0.86 | 2.55 | 3.335 (4) | 152 |
| N3—H3 | 0.86 | 2.61 | 3.320 (5) | 141 |
| N4—H4 | 0.86 | 2.51 | 3.370 (5) | 175 |
| N5—H5 | 0.86 | 2.54 | 3.363 (4) | 161 |
| N5—H5 | 0.86 | 2.11 | 2.933 (7) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) .