Literature DB >> 24826114

2-Amino-6-methyl-pyridinium 2,2,2-tri-chloro-acetate.

K Syed Suresh Babu1, G Peramaiyan2, M NizamMohideen3, R Mohan2.   

Abstract

In the asymmetric unit of the title mol-ecular salt, C6H9N2 (+)·C2Cl3O2 (-), there are two independent 2-amino-6-methyl-pyridinium cations and two independent tri-chloro-acetate anions. The pyridine N atom of the 2-amino-6-methyl-pyridine mol-ecule is protonated and the geometries of these cations reveal amine-imine tautomerism. Both protonated 2-amino-6-methyl-pyridinium cations are essentially planar [maximum deviations = 0.026 (2) and 0.012 (2) Å]. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R 2 (2)(8) ring motif. These motifs are connected via N-H⋯O and C-H⋯O hydrogen bonds to form slabs parallel to (101).

Entities:  

Year:  2014        PMID: 24826114      PMCID: PMC3998557          DOI: 10.1107/S1600536814004553

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pyridinium derivatives, see: Akkurt et al. (2005 ▶). For pyridine derivatives as templating agents, see: Desiraju (2001 ▶); Jeffrey (1997 ▶). For details of 2-amino­pyridine and its derivatives, see: Katritzky et al. (1996 ▶); Tomaru et al. (1991 ▶). For bond lengths and angles in similar structures, see: Jin, Shun et al. (2005 ▶); Feng et al. (2007 ▶); Nahringbauer & Kvick (1977 ▶). For other 2-amino­pyridinium structures, see: Jin et al. (2000 ▶, 2001 ▶); Jin, Tu et al. (2005 ▶). For studies on the tautomeric forms of 2-amino­pyridine systems, see: Ishikawa et al. (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H9N2C2Cl3O2 M = 271.52 Monoclinic, a = 11.6376 (5) Å b = 14.6648 (6) Å c = 13.9100 (6) Å β = 96.024 (1)° V = 2360.81 (17) Å3 Z = 8 Mo Kα radiation μ = 0.76 mm−1 T = 293 K 0.35 × 0.30 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.777, T max = 0.805 39609 measured reflections 5784 independent reflections 3922 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.129 S = 1.04 5784 reflections 297 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.64 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814004553/su2705sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814004553/su2705Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814004553/su2705Isup3.cml CCDC reference: 988938 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H9N2+·C2Cl3O2F(000) = 1104
Mr = 271.52Dx = 1.528 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5784 reflections
a = 11.6376 (5) Åθ = 2.0–28.1°
b = 14.6648 (6) ŵ = 0.76 mm1
c = 13.9100 (6) ÅT = 293 K
β = 96.024 (1)°Block, colourless
V = 2360.81 (17) Å30.35 × 0.30 × 0.30 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer5784 independent reflections
Radiation source: fine-focus sealed tube3922 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω and φ scansθmax = 28.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −15→12
Tmin = 0.777, Tmax = 0.805k = −19→19
39609 measured reflectionsl = −16→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0512P)2 + 1.4785P] where P = (Fo2 + 2Fc2)/3
5784 reflections(Δ/σ)max < 0.001
297 parametersΔρmax = 0.66 e Å3
6 restraintsΔρmin = −0.64 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3813 (2)0.07767 (18)0.03971 (18)0.0507 (6)
C20.3271 (3)0.0212 (2)0.1018 (2)0.0713 (8)
H20.33430.03260.16790.086*
C30.2640 (3)−0.0500 (3)0.0649 (3)0.0852 (10)
H30.2284−0.08800.10630.102*
C40.2509 (3)−0.0681 (2)−0.0346 (3)0.0751 (9)
H40.2071−0.1176−0.05880.090*
C50.3029 (2)−0.01251 (17)−0.0952 (2)0.0549 (6)
C60.2932 (3)−0.0214 (2)−0.2021 (2)0.0737 (9)
H6A0.27290.0366−0.23110.111*
H6B0.2345−0.0653−0.22260.111*
H6C0.3658−0.0412−0.22160.111*
C70.49848 (19)0.20079 (16)0.35230 (16)0.0429 (5)
C80.5578 (2)0.29325 (16)0.33022 (17)0.0464 (5)
C90.3521 (2)−0.03512 (16)0.41212 (17)0.0476 (5)
C100.2838 (3)−0.1102 (2)0.4323 (2)0.0663 (8)
H100.2952−0.16670.40440.080*
C110.2013 (3)−0.0996 (2)0.4928 (2)0.0753 (9)
H110.1557−0.14920.50600.090*
C120.1831 (3)−0.0162 (2)0.5356 (2)0.0710 (9)
H120.1254−0.01000.57660.085*
C130.2502 (2)0.0565 (2)0.51737 (16)0.0544 (6)
C140.2420 (3)0.1494 (2)0.5583 (2)0.0767 (9)
H14A0.30290.15800.60960.115*
H14B0.16860.15650.58320.115*
H14C0.24900.19390.50860.115*
C150.0091 (2)0.26412 (17)0.33994 (19)0.0491 (6)
C160.0641 (2)0.19779 (16)0.26897 (18)0.0460 (5)
N10.36821 (17)0.05787 (13)−0.05609 (15)0.0459 (4)
N30.33292 (17)0.04379 (13)0.45650 (13)0.0437 (4)
N20.4457 (2)0.14867 (19)0.06970 (17)0.0668 (6)
N40.4353 (2)−0.03672 (15)0.35294 (18)0.0605 (6)
O10.48960 (16)0.14569 (12)0.28478 (12)0.0549 (4)
O20.46713 (18)0.19317 (14)0.43335 (12)0.0660 (5)
O3−0.01711 (18)0.34018 (12)0.30739 (14)0.0637 (5)
O40.0005 (2)0.23281 (15)0.42110 (15)0.0791 (6)
Cl10.55673 (9)0.37373 (6)0.42317 (6)0.0896 (3)
Cl20.70242 (6)0.27091 (5)0.31008 (6)0.0710 (2)
Cl30.48451 (7)0.34145 (5)0.22382 (6)0.0752 (2)
Cl40.21459 (6)0.22009 (6)0.28120 (6)0.0697 (2)
Cl50.01042 (7)0.21709 (6)0.14738 (5)0.0719 (2)
Cl60.04405 (9)0.08231 (5)0.29620 (7)0.0861 (3)
H4B0.463 (2)0.0160 (11)0.3358 (19)0.059 (8)*
H2B0.474 (2)0.1848 (16)0.0269 (17)0.064 (9)*
H4A0.447 (3)−0.0864 (14)0.320 (2)0.082 (10)*
H2A0.455 (3)0.157 (2)0.1332 (8)0.082 (10)*
H1A0.403 (2)0.0949 (15)−0.0955 (16)0.057 (8)*
H3A0.379 (2)0.0908 (13)0.446 (2)0.061 (8)*
U11U22U33U12U13U23
C10.0481 (14)0.0549 (14)0.0483 (13)0.0081 (11)0.0017 (10)0.0075 (11)
C20.0690 (19)0.084 (2)0.0605 (17)−0.0020 (16)0.0039 (14)0.0247 (16)
C30.078 (2)0.083 (2)0.095 (3)−0.0068 (19)0.0106 (19)0.039 (2)
C40.0634 (19)0.0526 (16)0.108 (3)−0.0103 (14)0.0013 (17)0.0084 (17)
C50.0451 (14)0.0417 (12)0.0764 (18)0.0072 (10)−0.0007 (12)−0.0040 (12)
C60.076 (2)0.0650 (18)0.079 (2)0.0008 (15)0.0022 (16)−0.0237 (16)
C70.0384 (11)0.0478 (12)0.0423 (12)−0.0102 (10)0.0031 (9)0.0052 (10)
C80.0464 (13)0.0488 (13)0.0453 (12)−0.0116 (10)0.0105 (10)0.0016 (10)
C90.0539 (14)0.0453 (13)0.0428 (12)−0.0052 (11)0.0019 (10)0.0071 (10)
C100.079 (2)0.0514 (15)0.0682 (18)−0.0218 (14)0.0046 (15)0.0071 (13)
C110.077 (2)0.084 (2)0.0644 (18)−0.0401 (18)0.0034 (15)0.0191 (16)
C120.0600 (17)0.104 (2)0.0517 (15)−0.0272 (17)0.0167 (13)0.0075 (16)
C130.0502 (14)0.0788 (18)0.0352 (12)−0.0098 (13)0.0087 (10)0.0016 (12)
C140.082 (2)0.092 (2)0.0611 (17)−0.0084 (18)0.0311 (16)−0.0186 (17)
C150.0401 (12)0.0493 (14)0.0595 (15)−0.0035 (10)0.0123 (10)−0.0009 (11)
C160.0422 (12)0.0440 (12)0.0525 (13)−0.0031 (10)0.0074 (10)0.0012 (10)
N10.0439 (11)0.0427 (10)0.0513 (11)0.0070 (9)0.0057 (9)0.0027 (9)
N30.0475 (11)0.0494 (11)0.0349 (9)−0.0116 (9)0.0073 (8)0.0031 (8)
N20.0811 (17)0.0736 (16)0.0452 (13)−0.0144 (13)0.0042 (12)−0.0005 (12)
N40.0733 (16)0.0448 (12)0.0675 (14)−0.0029 (11)0.0263 (12)−0.0012 (11)
O10.0684 (11)0.0488 (9)0.0492 (10)−0.0155 (8)0.0144 (8)−0.0021 (8)
O20.0833 (14)0.0737 (12)0.0437 (10)−0.0383 (11)0.0188 (9)−0.0022 (9)
O30.0745 (13)0.0496 (10)0.0696 (12)0.0085 (9)0.0205 (10)0.0019 (9)
O40.1060 (18)0.0731 (13)0.0642 (13)0.0115 (12)0.0377 (12)0.0076 (10)
Cl10.1227 (8)0.0727 (5)0.0798 (5)−0.0399 (5)0.0406 (5)−0.0284 (4)
Cl20.0438 (4)0.0737 (5)0.0975 (6)−0.0119 (3)0.0168 (3)0.0099 (4)
Cl30.0823 (5)0.0593 (4)0.0805 (5)−0.0066 (4)−0.0083 (4)0.0246 (4)
Cl40.0392 (3)0.0947 (6)0.0764 (5)0.0005 (3)0.0112 (3)−0.0015 (4)
Cl50.0810 (5)0.0774 (5)0.0538 (4)0.0001 (4)−0.0092 (3)−0.0080 (3)
Cl60.1113 (7)0.0446 (4)0.1068 (7)−0.0056 (4)0.0323 (5)0.0062 (4)
C1—N21.324 (4)C10—C111.350 (5)
C1—N11.357 (3)C10—H100.9300
C1—C21.394 (4)C11—C121.385 (5)
C2—C31.346 (5)C11—H110.9300
C2—H20.9300C12—C131.362 (4)
C3—C41.401 (5)C12—H120.9300
C3—H30.9300C13—N31.360 (3)
C4—C51.360 (4)C13—C141.483 (4)
C4—H40.9300C14—H14A0.9600
C5—N11.361 (3)C14—H14B0.9600
C5—C61.485 (4)C14—H14C0.9600
C6—H6A0.9600C15—O31.230 (3)
C6—H6B0.9600C15—O41.232 (3)
C6—H6C0.9600C15—C161.569 (3)
C7—O21.226 (3)C16—Cl61.756 (2)
C7—O11.235 (3)C16—Cl51.763 (3)
C7—C81.567 (3)C16—Cl41.772 (2)
C8—Cl11.752 (2)N1—H1A0.898 (10)
C8—Cl21.765 (3)N3—H3A0.896 (10)
C8—Cl31.776 (3)N2—H2B0.885 (10)
C9—N41.335 (3)N2—H2A0.886 (10)
C9—N31.341 (3)N4—H4B0.881 (10)
C9—C101.404 (3)N4—H4A0.879 (10)
N2—C1—N1118.6 (2)C10—C11—C12121.4 (3)
N2—C1—C2123.3 (3)C10—C11—H11119.3
N1—C1—C2118.0 (3)C12—C11—H11119.3
C3—C2—C1119.2 (3)C13—C12—C11119.7 (3)
C3—C2—H2120.4C13—C12—H12120.2
C1—C2—H2120.4C11—C12—H12120.2
C2—C3—C4121.5 (3)N3—C13—C12117.7 (3)
C2—C3—H3119.3N3—C13—C14116.3 (2)
C4—C3—H3119.3C12—C13—C14126.0 (3)
C5—C4—C3119.3 (3)C13—C14—H14A109.5
C5—C4—H4120.3C13—C14—H14B109.5
C3—C4—H4120.3H14A—C14—H14B109.5
C4—C5—N1118.2 (3)C13—C14—H14C109.5
C4—C5—C6125.2 (3)H14A—C14—H14C109.5
N1—C5—C6116.6 (2)H14B—C14—H14C109.5
C5—C6—H6A109.5O3—C15—O4129.4 (2)
C5—C6—H6B109.5O3—C15—C16115.6 (2)
H6A—C6—H6B109.5O4—C15—C16115.0 (2)
C5—C6—H6C109.5C15—C16—Cl6112.94 (17)
H6A—C6—H6C109.5C15—C16—Cl5112.14 (17)
H6B—C6—H6C109.5Cl6—C16—Cl5108.66 (13)
O2—C7—O1129.1 (2)C15—C16—Cl4106.82 (16)
O2—C7—C8116.1 (2)Cl6—C16—Cl4108.04 (13)
O1—C7—C8114.87 (19)Cl5—C16—Cl4108.03 (13)
C7—C8—Cl1113.64 (16)C1—N1—C5123.7 (2)
C7—C8—Cl2108.53 (17)C1—N1—H1A117.3 (18)
Cl1—C8—Cl2108.85 (13)C5—N1—H1A118.9 (18)
C7—C8—Cl3108.95 (16)C9—N3—C13124.6 (2)
Cl1—C8—Cl3107.87 (14)C9—N3—H3A117.3 (18)
Cl2—C8—Cl3108.92 (12)C13—N3—H3A118.1 (18)
N4—C9—N3117.7 (2)C1—N2—H2B120 (2)
N4—C9—C10124.9 (3)C1—N2—H2A115 (2)
N3—C9—C10117.4 (2)H2B—N2—H2A125 (3)
C11—C10—C9119.2 (3)C9—N4—H4B117.6 (19)
C11—C10—H10120.4C9—N4—H4A120 (2)
C9—C10—H10120.4H4B—N4—H4A120 (3)
N2—C1—C2—C3−179.4 (3)C11—C12—C13—N30.3 (4)
N1—C1—C2—C3−0.2 (4)C11—C12—C13—C14−179.4 (3)
C1—C2—C3—C4−0.6 (5)O3—C15—C16—Cl6−154.9 (2)
C2—C3—C4—C50.0 (5)O4—C15—C16—Cl626.5 (3)
C3—C4—C5—N11.4 (4)O3—C15—C16—Cl5−31.7 (3)
C3—C4—C5—C6−177.7 (3)O4—C15—C16—Cl5149.7 (2)
O2—C7—C8—Cl1−5.5 (3)O3—C15—C16—Cl486.5 (2)
O1—C7—C8—Cl1174.28 (18)O4—C15—C16—Cl4−92.2 (2)
O2—C7—C8—Cl2115.8 (2)N2—C1—N1—C5−179.0 (2)
O1—C7—C8—Cl2−64.5 (2)C2—C1—N1—C51.7 (4)
O2—C7—C8—Cl3−125.8 (2)C4—C5—N1—C1−2.3 (4)
O1—C7—C8—Cl354.0 (3)C6—C5—N1—C1176.9 (2)
N4—C9—C10—C11−179.3 (3)N4—C9—N3—C13178.8 (2)
N3—C9—C10—C111.5 (4)C10—C9—N3—C13−1.9 (4)
C9—C10—C11—C12−0.3 (5)C12—C13—N3—C91.0 (4)
C10—C11—C12—C13−0.6 (5)C14—C13—N3—C9−179.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3i0.90 (1)1.96 (1)2.856 (3)172 (3)
N2—H2B···O4i0.89 (1)1.95 (1)2.825 (3)167 (3)
N2—H2A···O10.89 (1)2.11 (1)2.982 (3)167 (3)
N3—H3A···O20.90 (1)1.84 (1)2.729 (2)175 (3)
N4—H4B···O10.88 (1)2.06 (1)2.929 (3)167 (3)
N4—H4A···O3ii0.88 (1)2.29 (2)3.096 (3)152 (3)
C6—H6C···O1iii0.962.503.413 (4)158
C11—H11···O4iv0.932.503.371 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O3i 0.90 (1)1.96 (1)2.856 (3)172 (3)
N2—H2B⋯O4i 0.89 (1)1.95 (1)2.825 (3)167 (3)
N2—H2A⋯O10.89 (1)2.11 (1)2.982 (3)167 (3)
N3—H3A⋯O20.90 (1)1.84 (1)2.729 (2)175 (3)
N4—H4B⋯O10.88 (1)2.06 (1)2.929 (3)167 (3)
N4—H4A⋯O3ii 0.88 (1)2.29 (2)3.096 (3)152 (3)
C6—H6C⋯O1iii 0.962.503.413 (4)158
C11—H11⋯O4iv 0.932.503.371 (4)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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5.  2-Amino-5-nitro-pyridinium hydrogen oxalate.

Authors:  M Ambrose Rajkumar; S Stanly John Xavier; S Anbarasu; Prem Anand Devarajan; M NizamMohideen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-26

6.  Crystal structure of bis[4-(di-methyl-amino)-pyridinium] bis(2-nitro-benzoate) trihydrate.

Authors:  N Sivakumar; S Muralidharan; G Chakkaravarthi; D Velmurugan; G Anbalagan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-20
  6 in total

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