| Literature DB >> 24826114 |
K Syed Suresh Babu1, G Peramaiyan2, M NizamMohideen3, R Mohan2.
Abstract
In the asymmetric unit of the title mol-ecular salt, C6H9N2 (+)·C2Cl3O2 (-), there are two independent 2-amino-6-methyl-pyridinium cations and two independent tri-chloro-acetate anions. The pyridine N atom of the 2-amino-6-methyl-pyridine mol-ecule is protonated and the geometries of these cations reveal amine-imine tautomerism. Both protonated 2-amino-6-methyl-pyridinium cations are essentially planar [maximum deviations = 0.026 (2) and 0.012 (2) Å]. In the crystal, the protonated N atom and the 2-amino group of the cation are hydrogen bonded to the carboxyl-ate O atoms of the anion via a pair of N-H⋯O hydrogen bonds, forming an R 2 (2)(8) ring motif. These motifs are connected via N-H⋯O and C-H⋯O hydrogen bonds to form slabs parallel to (101).Entities:
Year: 2014 PMID: 24826114 PMCID: PMC3998557 DOI: 10.1107/S1600536814004553
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C2Cl3O2− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 5784 reflections |
| θ = 2.0–28.1° | |
| µ = 0.76 mm−1 | |
| β = 96.024 (1)° | Block, colourless |
| 0.35 × 0.30 × 0.30 mm | |
| Bruker Kappa APEXII CCD diffractometer | 5784 independent reflections |
| Radiation source: fine-focus sealed tube | 3922 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 28.3°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 39609 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5784 reflections | (Δ/σ)max < 0.001 |
| 297 parameters | Δρmax = 0.66 e Å−3 |
| 6 restraints | Δρmin = −0.64 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.3813 (2) | 0.07767 (18) | 0.03971 (18) | 0.0507 (6) | |
| C2 | 0.3271 (3) | 0.0212 (2) | 0.1018 (2) | 0.0713 (8) | |
| H2 | 0.3343 | 0.0326 | 0.1679 | 0.086* | |
| C3 | 0.2640 (3) | −0.0500 (3) | 0.0649 (3) | 0.0852 (10) | |
| H3 | 0.2284 | −0.0880 | 0.1063 | 0.102* | |
| C4 | 0.2509 (3) | −0.0681 (2) | −0.0346 (3) | 0.0751 (9) | |
| H4 | 0.2071 | −0.1176 | −0.0588 | 0.090* | |
| C5 | 0.3029 (2) | −0.01251 (17) | −0.0952 (2) | 0.0549 (6) | |
| C6 | 0.2932 (3) | −0.0214 (2) | −0.2021 (2) | 0.0737 (9) | |
| H6A | 0.2729 | 0.0366 | −0.2311 | 0.111* | |
| H6B | 0.2345 | −0.0653 | −0.2226 | 0.111* | |
| H6C | 0.3658 | −0.0412 | −0.2216 | 0.111* | |
| C7 | 0.49848 (19) | 0.20079 (16) | 0.35230 (16) | 0.0429 (5) | |
| C8 | 0.5578 (2) | 0.29325 (16) | 0.33022 (17) | 0.0464 (5) | |
| C9 | 0.3521 (2) | −0.03512 (16) | 0.41212 (17) | 0.0476 (5) | |
| C10 | 0.2838 (3) | −0.1102 (2) | 0.4323 (2) | 0.0663 (8) | |
| H10 | 0.2952 | −0.1667 | 0.4044 | 0.080* | |
| C11 | 0.2013 (3) | −0.0996 (2) | 0.4928 (2) | 0.0753 (9) | |
| H11 | 0.1557 | −0.1492 | 0.5060 | 0.090* | |
| C12 | 0.1831 (3) | −0.0162 (2) | 0.5356 (2) | 0.0710 (9) | |
| H12 | 0.1254 | −0.0100 | 0.5766 | 0.085* | |
| C13 | 0.2502 (2) | 0.0565 (2) | 0.51737 (16) | 0.0544 (6) | |
| C14 | 0.2420 (3) | 0.1494 (2) | 0.5583 (2) | 0.0767 (9) | |
| H14A | 0.3029 | 0.1580 | 0.6096 | 0.115* | |
| H14B | 0.1686 | 0.1565 | 0.5832 | 0.115* | |
| H14C | 0.2490 | 0.1939 | 0.5086 | 0.115* | |
| C15 | 0.0091 (2) | 0.26412 (17) | 0.33994 (19) | 0.0491 (6) | |
| C16 | 0.0641 (2) | 0.19779 (16) | 0.26897 (18) | 0.0460 (5) | |
| N1 | 0.36821 (17) | 0.05787 (13) | −0.05609 (15) | 0.0459 (4) | |
| N3 | 0.33292 (17) | 0.04379 (13) | 0.45650 (13) | 0.0437 (4) | |
| N2 | 0.4457 (2) | 0.14867 (19) | 0.06970 (17) | 0.0668 (6) | |
| N4 | 0.4353 (2) | −0.03672 (15) | 0.35294 (18) | 0.0605 (6) | |
| O1 | 0.48960 (16) | 0.14569 (12) | 0.28478 (12) | 0.0549 (4) | |
| O2 | 0.46713 (18) | 0.19317 (14) | 0.43335 (12) | 0.0660 (5) | |
| O3 | −0.01711 (18) | 0.34018 (12) | 0.30739 (14) | 0.0637 (5) | |
| O4 | 0.0005 (2) | 0.23281 (15) | 0.42110 (15) | 0.0791 (6) | |
| Cl1 | 0.55673 (9) | 0.37373 (6) | 0.42317 (6) | 0.0896 (3) | |
| Cl2 | 0.70242 (6) | 0.27091 (5) | 0.31008 (6) | 0.0710 (2) | |
| Cl3 | 0.48451 (7) | 0.34145 (5) | 0.22382 (6) | 0.0752 (2) | |
| Cl4 | 0.21459 (6) | 0.22009 (6) | 0.28120 (6) | 0.0697 (2) | |
| Cl5 | 0.01042 (7) | 0.21709 (6) | 0.14738 (5) | 0.0719 (2) | |
| Cl6 | 0.04405 (9) | 0.08231 (5) | 0.29620 (7) | 0.0861 (3) | |
| H4B | 0.463 (2) | 0.0160 (11) | 0.3358 (19) | 0.059 (8)* | |
| H2B | 0.474 (2) | 0.1848 (16) | 0.0269 (17) | 0.064 (9)* | |
| H4A | 0.447 (3) | −0.0864 (14) | 0.320 (2) | 0.082 (10)* | |
| H2A | 0.455 (3) | 0.157 (2) | 0.1332 (8) | 0.082 (10)* | |
| H1A | 0.403 (2) | 0.0949 (15) | −0.0955 (16) | 0.057 (8)* | |
| H3A | 0.379 (2) | 0.0908 (13) | 0.446 (2) | 0.061 (8)* |
| C1 | 0.0481 (14) | 0.0549 (14) | 0.0483 (13) | 0.0081 (11) | 0.0017 (10) | 0.0075 (11) |
| C2 | 0.0690 (19) | 0.084 (2) | 0.0605 (17) | −0.0020 (16) | 0.0039 (14) | 0.0247 (16) |
| C3 | 0.078 (2) | 0.083 (2) | 0.095 (3) | −0.0068 (19) | 0.0106 (19) | 0.039 (2) |
| C4 | 0.0634 (19) | 0.0526 (16) | 0.108 (3) | −0.0103 (14) | 0.0013 (17) | 0.0084 (17) |
| C5 | 0.0451 (14) | 0.0417 (12) | 0.0764 (18) | 0.0072 (10) | −0.0007 (12) | −0.0040 (12) |
| C6 | 0.076 (2) | 0.0650 (18) | 0.079 (2) | 0.0008 (15) | 0.0022 (16) | −0.0237 (16) |
| C7 | 0.0384 (11) | 0.0478 (12) | 0.0423 (12) | −0.0102 (10) | 0.0031 (9) | 0.0052 (10) |
| C8 | 0.0464 (13) | 0.0488 (13) | 0.0453 (12) | −0.0116 (10) | 0.0105 (10) | 0.0016 (10) |
| C9 | 0.0539 (14) | 0.0453 (13) | 0.0428 (12) | −0.0052 (11) | 0.0019 (10) | 0.0071 (10) |
| C10 | 0.079 (2) | 0.0514 (15) | 0.0682 (18) | −0.0218 (14) | 0.0046 (15) | 0.0071 (13) |
| C11 | 0.077 (2) | 0.084 (2) | 0.0644 (18) | −0.0401 (18) | 0.0034 (15) | 0.0191 (16) |
| C12 | 0.0600 (17) | 0.104 (2) | 0.0517 (15) | −0.0272 (17) | 0.0167 (13) | 0.0075 (16) |
| C13 | 0.0502 (14) | 0.0788 (18) | 0.0352 (12) | −0.0098 (13) | 0.0087 (10) | 0.0016 (12) |
| C14 | 0.082 (2) | 0.092 (2) | 0.0611 (17) | −0.0084 (18) | 0.0311 (16) | −0.0186 (17) |
| C15 | 0.0401 (12) | 0.0493 (14) | 0.0595 (15) | −0.0035 (10) | 0.0123 (10) | −0.0009 (11) |
| C16 | 0.0422 (12) | 0.0440 (12) | 0.0525 (13) | −0.0031 (10) | 0.0074 (10) | 0.0012 (10) |
| N1 | 0.0439 (11) | 0.0427 (10) | 0.0513 (11) | 0.0070 (9) | 0.0057 (9) | 0.0027 (9) |
| N3 | 0.0475 (11) | 0.0494 (11) | 0.0349 (9) | −0.0116 (9) | 0.0073 (8) | 0.0031 (8) |
| N2 | 0.0811 (17) | 0.0736 (16) | 0.0452 (13) | −0.0144 (13) | 0.0042 (12) | −0.0005 (12) |
| N4 | 0.0733 (16) | 0.0448 (12) | 0.0675 (14) | −0.0029 (11) | 0.0263 (12) | −0.0012 (11) |
| O1 | 0.0684 (11) | 0.0488 (9) | 0.0492 (10) | −0.0155 (8) | 0.0144 (8) | −0.0021 (8) |
| O2 | 0.0833 (14) | 0.0737 (12) | 0.0437 (10) | −0.0383 (11) | 0.0188 (9) | −0.0022 (9) |
| O3 | 0.0745 (13) | 0.0496 (10) | 0.0696 (12) | 0.0085 (9) | 0.0205 (10) | 0.0019 (9) |
| O4 | 0.1060 (18) | 0.0731 (13) | 0.0642 (13) | 0.0115 (12) | 0.0377 (12) | 0.0076 (10) |
| Cl1 | 0.1227 (8) | 0.0727 (5) | 0.0798 (5) | −0.0399 (5) | 0.0406 (5) | −0.0284 (4) |
| Cl2 | 0.0438 (4) | 0.0737 (5) | 0.0975 (6) | −0.0119 (3) | 0.0168 (3) | 0.0099 (4) |
| Cl3 | 0.0823 (5) | 0.0593 (4) | 0.0805 (5) | −0.0066 (4) | −0.0083 (4) | 0.0246 (4) |
| Cl4 | 0.0392 (3) | 0.0947 (6) | 0.0764 (5) | 0.0005 (3) | 0.0112 (3) | −0.0015 (4) |
| Cl5 | 0.0810 (5) | 0.0774 (5) | 0.0538 (4) | 0.0001 (4) | −0.0092 (3) | −0.0080 (3) |
| Cl6 | 0.1113 (7) | 0.0446 (4) | 0.1068 (7) | −0.0056 (4) | 0.0323 (5) | 0.0062 (4) |
| C1—N2 | 1.324 (4) | C10—C11 | 1.350 (5) |
| C1—N1 | 1.357 (3) | C10—H10 | 0.9300 |
| C1—C2 | 1.394 (4) | C11—C12 | 1.385 (5) |
| C2—C3 | 1.346 (5) | C11—H11 | 0.9300 |
| C2—H2 | 0.9300 | C12—C13 | 1.362 (4) |
| C3—C4 | 1.401 (5) | C12—H12 | 0.9300 |
| C3—H3 | 0.9300 | C13—N3 | 1.360 (3) |
| C4—C5 | 1.360 (4) | C13—C14 | 1.483 (4) |
| C4—H4 | 0.9300 | C14—H14A | 0.9600 |
| C5—N1 | 1.361 (3) | C14—H14B | 0.9600 |
| C5—C6 | 1.485 (4) | C14—H14C | 0.9600 |
| C6—H6A | 0.9600 | C15—O3 | 1.230 (3) |
| C6—H6B | 0.9600 | C15—O4 | 1.232 (3) |
| C6—H6C | 0.9600 | C15—C16 | 1.569 (3) |
| C7—O2 | 1.226 (3) | C16—Cl6 | 1.756 (2) |
| C7—O1 | 1.235 (3) | C16—Cl5 | 1.763 (3) |
| C7—C8 | 1.567 (3) | C16—Cl4 | 1.772 (2) |
| C8—Cl1 | 1.752 (2) | N1—H1A | 0.898 (10) |
| C8—Cl2 | 1.765 (3) | N3—H3A | 0.896 (10) |
| C8—Cl3 | 1.776 (3) | N2—H2B | 0.885 (10) |
| C9—N4 | 1.335 (3) | N2—H2A | 0.886 (10) |
| C9—N3 | 1.341 (3) | N4—H4B | 0.881 (10) |
| C9—C10 | 1.404 (3) | N4—H4A | 0.879 (10) |
| N2—C1—N1 | 118.6 (2) | C10—C11—C12 | 121.4 (3) |
| N2—C1—C2 | 123.3 (3) | C10—C11—H11 | 119.3 |
| N1—C1—C2 | 118.0 (3) | C12—C11—H11 | 119.3 |
| C3—C2—C1 | 119.2 (3) | C13—C12—C11 | 119.7 (3) |
| C3—C2—H2 | 120.4 | C13—C12—H12 | 120.2 |
| C1—C2—H2 | 120.4 | C11—C12—H12 | 120.2 |
| C2—C3—C4 | 121.5 (3) | N3—C13—C12 | 117.7 (3) |
| C2—C3—H3 | 119.3 | N3—C13—C14 | 116.3 (2) |
| C4—C3—H3 | 119.3 | C12—C13—C14 | 126.0 (3) |
| C5—C4—C3 | 119.3 (3) | C13—C14—H14A | 109.5 |
| C5—C4—H4 | 120.3 | C13—C14—H14B | 109.5 |
| C3—C4—H4 | 120.3 | H14A—C14—H14B | 109.5 |
| C4—C5—N1 | 118.2 (3) | C13—C14—H14C | 109.5 |
| C4—C5—C6 | 125.2 (3) | H14A—C14—H14C | 109.5 |
| N1—C5—C6 | 116.6 (2) | H14B—C14—H14C | 109.5 |
| C5—C6—H6A | 109.5 | O3—C15—O4 | 129.4 (2) |
| C5—C6—H6B | 109.5 | O3—C15—C16 | 115.6 (2) |
| H6A—C6—H6B | 109.5 | O4—C15—C16 | 115.0 (2) |
| C5—C6—H6C | 109.5 | C15—C16—Cl6 | 112.94 (17) |
| H6A—C6—H6C | 109.5 | C15—C16—Cl5 | 112.14 (17) |
| H6B—C6—H6C | 109.5 | Cl6—C16—Cl5 | 108.66 (13) |
| O2—C7—O1 | 129.1 (2) | C15—C16—Cl4 | 106.82 (16) |
| O2—C7—C8 | 116.1 (2) | Cl6—C16—Cl4 | 108.04 (13) |
| O1—C7—C8 | 114.87 (19) | Cl5—C16—Cl4 | 108.03 (13) |
| C7—C8—Cl1 | 113.64 (16) | C1—N1—C5 | 123.7 (2) |
| C7—C8—Cl2 | 108.53 (17) | C1—N1—H1A | 117.3 (18) |
| Cl1—C8—Cl2 | 108.85 (13) | C5—N1—H1A | 118.9 (18) |
| C7—C8—Cl3 | 108.95 (16) | C9—N3—C13 | 124.6 (2) |
| Cl1—C8—Cl3 | 107.87 (14) | C9—N3—H3A | 117.3 (18) |
| Cl2—C8—Cl3 | 108.92 (12) | C13—N3—H3A | 118.1 (18) |
| N4—C9—N3 | 117.7 (2) | C1—N2—H2B | 120 (2) |
| N4—C9—C10 | 124.9 (3) | C1—N2—H2A | 115 (2) |
| N3—C9—C10 | 117.4 (2) | H2B—N2—H2A | 125 (3) |
| C11—C10—C9 | 119.2 (3) | C9—N4—H4B | 117.6 (19) |
| C11—C10—H10 | 120.4 | C9—N4—H4A | 120 (2) |
| C9—C10—H10 | 120.4 | H4B—N4—H4A | 120 (3) |
| N2—C1—C2—C3 | −179.4 (3) | C11—C12—C13—N3 | 0.3 (4) |
| N1—C1—C2—C3 | −0.2 (4) | C11—C12—C13—C14 | −179.4 (3) |
| C1—C2—C3—C4 | −0.6 (5) | O3—C15—C16—Cl6 | −154.9 (2) |
| C2—C3—C4—C5 | 0.0 (5) | O4—C15—C16—Cl6 | 26.5 (3) |
| C3—C4—C5—N1 | 1.4 (4) | O3—C15—C16—Cl5 | −31.7 (3) |
| C3—C4—C5—C6 | −177.7 (3) | O4—C15—C16—Cl5 | 149.7 (2) |
| O2—C7—C8—Cl1 | −5.5 (3) | O3—C15—C16—Cl4 | 86.5 (2) |
| O1—C7—C8—Cl1 | 174.28 (18) | O4—C15—C16—Cl4 | −92.2 (2) |
| O2—C7—C8—Cl2 | 115.8 (2) | N2—C1—N1—C5 | −179.0 (2) |
| O1—C7—C8—Cl2 | −64.5 (2) | C2—C1—N1—C5 | 1.7 (4) |
| O2—C7—C8—Cl3 | −125.8 (2) | C4—C5—N1—C1 | −2.3 (4) |
| O1—C7—C8—Cl3 | 54.0 (3) | C6—C5—N1—C1 | 176.9 (2) |
| N4—C9—C10—C11 | −179.3 (3) | N4—C9—N3—C13 | 178.8 (2) |
| N3—C9—C10—C11 | 1.5 (4) | C10—C9—N3—C13 | −1.9 (4) |
| C9—C10—C11—C12 | −0.3 (5) | C12—C13—N3—C9 | 1.0 (4) |
| C10—C11—C12—C13 | −0.6 (5) | C14—C13—N3—C9 | −179.3 (3) |
| H··· | ||||
| N1—H1 | 0.90 (1) | 1.96 (1) | 2.856 (3) | 172 (3) |
| N2—H2 | 0.89 (1) | 1.95 (1) | 2.825 (3) | 167 (3) |
| N2—H2 | 0.89 (1) | 2.11 (1) | 2.982 (3) | 167 (3) |
| N3—H3 | 0.90 (1) | 1.84 (1) | 2.729 (2) | 175 (3) |
| N4—H4 | 0.88 (1) | 2.06 (1) | 2.929 (3) | 167 (3) |
| N4—H4 | 0.88 (1) | 2.29 (2) | 3.096 (3) | 152 (3) |
| C6—H6 | 0.96 | 2.50 | 3.413 (4) | 158 |
| C11—H11···O4iv | 0.93 | 2.50 | 3.371 (4) | 157 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.90 (1) | 1.96 (1) | 2.856 (3) | 172 (3) |
| N2—H2 | 0.89 (1) | 1.95 (1) | 2.825 (3) | 167 (3) |
| N2—H2 | 0.89 (1) | 2.11 (1) | 2.982 (3) | 167 (3) |
| N3—H3 | 0.90 (1) | 1.84 (1) | 2.729 (2) | 175 (3) |
| N4—H4 | 0.88 (1) | 2.06 (1) | 2.929 (3) | 167 (3) |
| N4—H4 | 0.88 (1) | 2.29 (2) | 3.096 (3) | 152 (3) |
| C6—H6 | 0.96 | 2.50 | 3.413 (4) | 158 |
| C11—H11⋯O4iv | 0.93 | 2.50 | 3.371 (4) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .