| Literature DB >> 24825461 |
Satu Hämäläinen1, Svetlana Solovieva1, Tapio Vehmas1, Katariina Luoma2, Päivi Leino-Arjas1, Ari Hirvonen1.
Abstract
OBJECTIVES: Our aims were to replicate some previously reported associations of single nucleotide polymorphisms (SNPs) in five genes (A2BP1, COG5, GDF5, HFE, ESR1) with hand osteoarthritis (OA), and to examine whether genes (BCAP29, DIO2, DUS4L, DVWA, HLA, PTGS2, PARD3B, TGFB1 and TRIB1) associated with OA at other joint sites were associated with hand OA among Finnish women.Entities:
Mesh:
Substances:
Year: 2014 PMID: 24825461 PMCID: PMC4019597 DOI: 10.1371/journal.pone.0097417
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Selected characteristics of study population.
| Radiographic OA | Symptomatic DIP OA | |||
| No | Yes | No | Yes | |
|
| 382 (70.5%) | 160 (29.5%) | 493 (91.0%) | 49 (9.0%) |
| Age (mean ± SD) | 53.0±5.2 | 56.3±4.7 | 53.6±5.2 | 57.7±4.2 |
| BMI (mean ± SD) | 24.3±3.5 | 25.0±3.8 | 24.4±3.6 | 25.1±3.3 |
| Pinch grip strength(mean ± SD) | 55.9±7.4 | 52.3±9.2 | 55.2±8.1 | 51.5±7.0 |
|
| 222 (75.5%) | 72 (24.5%) | 274 (93.2%) | 20 (6.8%) |
| Age (mean ± SD) | 52.6±5.6 | 57.1±5.6 | 53.3±5.8 | 59.4±4.8 |
| BMI (mean ± SD) | 23.8±3.2 | 24.5±3.3 | 23.9±3.3 | 23.9±3.0 |
| Pinch grip strength(mean ± SD) | 56.3±7.5 | 52.7±10.1 | 55.8±8.2 | 50.4±8.4 |
|
| 160 (64.5%) | 88 (35.5%) | 219 (88.3%) | 29 (11.7%) |
| Age (mean ± SD) | 53.5±4.5 | 55.7±3.8 | 53.9±4.5 | 56.5±3.3 |
| BMI (mean ± SD) | 25.0±3.8 | 25.4±4.1 | 25.0±4.0 | 25.9±3.3 |
| Pinch grip strength(mean ± SD) | 55.3±7.1 | 52.0±8.4 | 54.4±8.0 | 52.2±5.8 |
*p = 0.006 for difference between prevalence among dentists and among teachers.
**p = 0.05 for difference between the prevalence among dentists and among teachers.
Association of studied polymorphisms with ROA in the total material and by occupation.
| Gene | Chr | SNP | MAF (%) | Group | MAF (%) Our study | HWE | ROA | |||||
| NCBI | HapMap | Total | Case | Control | (p-value) | OR | 95% CI | p-value | ||||
|
| ||||||||||||
| A2BP1 | 16 | rs716508 | 39 | 28 | All | 35 | 31 | 36 | 0.09 |
|
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| Dentists | 35 | 33 | 36 | 0.69 | 0.39–1.23 | 0.19 | ||||||
| Teachers | 34 | 28 | 37 | 0.58 | 0.34–1.01 | 0.05 | ||||||
| COG5 | 7 | rs3757713 | 14 | 21 | All | 19 | 20 | 18 | 0.07 | 1.16 | 0.83–1.63 | 0.38 |
| Dentists | 19 | 23 | 18 | 1.60 | 0.90–2.86 | 0.09 | ||||||
| Teachers | 18 | 18 | 18 | 0.97 | 0.54–1.75 | 0.92 | ||||||
| COG5 | 7 | rs3815148 | 19 | 22 | All | 19 | 20 | 18 | 0.12 | 1.14 | 0.81–1.59 | 0.45 |
| Dentists | 19 | 24 | 18 | 1.51 | 0.84–2.71 | 0.11 | ||||||
| Teachers | 18 | 17 | 18 | 0.90 | 0.50–1.62 | 0.74 | ||||||
| GDF5 | 20 | rs143383 | 29 | 32 | All | 43 | 41 | 43 | 0.55 | 0.93 | 0.70–1.22 | 0.58 |
| Dentists | 43 | 40 | 44 | 0.80 | 0.44–1.43 | 0.49 | ||||||
| Teachers | 42 | 42 | 42 | 1.21 | 0.68–2.14 | 0.51 | ||||||
| HFE | 6 | rs1799945 | 8 | 18 | All | 13 | 13 | 12 | 0.53 | 1.15 | 0.76–1.74 | 0.52 |
| Dentists | 12 | 10 | 12 | 0.86 | 0.43–1.74 | 0.68 | ||||||
| Teachers | 14 | 15 | 13 | 1.55 | 0.84–2.88 | 0.19 | ||||||
| ESR1 | 6 | rs2234693 | 44 | 41 | All | 40 | 39 | 41 | 0.60 | 0.94 | 0.71–1.24 | 0.67 |
| Dentists | 41 | 40 | 41 | 0.80 | 0.45–1.43 | 0.45 | ||||||
| Teachers | 40 | 39 | 40 | 1.08 | 0.62–1.89 | 0.82 | ||||||
| ESR1 | 6 | rs9340799 | 26 | 30 | All | 25 | 26 | 25 | 0.20 | 1.05 | 0.76–1.45 | 0.78 |
| Dentists | 27 | 26 | 27 | 0.83 | 0.47–1.45 | 0.51 | ||||||
| Teachers | 24 | 26 | 23 | 1.62 | 0.94–2.79 | 0.08 | ||||||
|
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| PTGS2 | 1 | rs4140564 | 4 | 8 | All | 7 | 6 | 7 | 0.35 | 0.90 | 0.50–1.61 | 0.72 |
| Dentists | 6 | 3 | 7 | 0.40 | 0.13–1.21 | 0.08 | ||||||
| Teachers | 8 | 9 | 7 | 1.44 | 0.69–3.02 | 0.33 | ||||||
| PARD3B | 2 | rs1207421 | 13 | 9 | All | 10 | 11 | 9 | 1.00 | 1.04 | 0.66–1.64 | 0.87 |
| Dentists | 10 | 12 | 9 | 1.17 | 0.59–2.33 | 0.67 | ||||||
| Teachers | 10 | 10 | 9 | 0.90 | 0.45–1.82 | 0.80 | ||||||
| DVWA | 3 | rs7639618 | 26 | 18 | All | 16 | 16 | 16 | 0.95 | 1.11 | 0.76–1.63 | 0.58 |
| Dentists | 18 | 19 | 17 | 1.52 | 0.84–2.76 | 0.16 | ||||||
| Teachers | 14 | 14 | 14 | 0.82 | 0.44–1.52 | 0.57 | ||||||
| HLA | 6 | rs10947262 | 17 | 6 | All | 14 | 15 | 14 | 0.68 | 1.06 | 0.72–1.56 | 0.78 |
| Dentists | 15 | 16 | 14 | 1.10 | 0.59–2.05 | 0.82 | ||||||
| Teachers | 14 | 14 | 14 | 1.01 | 0.54–1.89 | 0.99 | ||||||
| BCAP29 | 7 | rs10953541 | 14 | 27 | All | 26 | 27 | 25 | 0.18 | 1.09 | 0.81–1.48 | 0.58 |
| Dentists | 27 | 29 | 26 | 1.43 | 0.81–2.51 | 0.18 | ||||||
| Teachers | 24 | 25 | 24 | 1.06 | 0.61–1.83 | 0.78 | ||||||
| DUS4L | 7 | rs4730250 | 12 | 17 | All | 15 | 17 | 15 | 0.23 | 1.15 | 0.80–1.66 | 0.46 |
| Dentists | 16 | 20 | 14 | 1.63 | 0.89–2.97 | 0.10 | ||||||
| Teachers | 14 | 14 | 15 | 0.80 | 0.43–1.49 | 0.49 | ||||||
| TRIB1 | 8 | rs4512391 | 38 | 41 | All | 26 | 25 | 27 | 0.95 | 0.87 | 0.64–1.20 | 0.40 |
| Dentists | 27 | 28 | 27 | 1.17 | 0.66–2.04 | 0.58 | ||||||
| Teachers | 25 | 22 | 26 | 0.75 | 0.44–1.31 | 0.32 | ||||||
| DIO2 | 14 | rs225014 | 42 | 39 | All | 28 | 27 | 29 | 0.10 | 0.85 | 0.62–1.17 | 0.32 |
| Dentists | 28 | 30 | 27 | 1.05 | 0.60–1.85 | 0.88 | ||||||
| Teachers | 28 | 24 | 31 | 0.72 | 0.42–1.23 | 0.24 | ||||||
| TGFB1 | 19 | rs1800470/rs1982073 | 44 | NA | All | 29 | 31 | 29 | 0.58 | 1.15 | 0.85–1.57 | 0.36 |
| Dentists | 31 | 29 | 31 | 1.10 | 0.63–1.93 | 0.71 | ||||||
| Teachers | 28 | 32 | 25 | 1.29 | 0.75–2.23 | 0.36 | ||||||
Logistic regression analysis with log-additive model in group “All”, and dominant model in groups “Dentists” and “Teachers”.
ORs and 95% CIs are adjusted for age, occupation and body mass index (BMI) in group “All” and for age and BMI in groups “Dentists” and “Teachers”.
Association of studied polymorphisms with symptomatic DIP OA in the total material and by occupation.
| Gene | Chr | SNP | MAF (%) | Group | MAF (%)This study | HWE | Symptomatic DIP OA | |||||
| NCBI | HapMap | Total | Case | Control | (p-value) | OR | 95% CI | p-value | ||||
|
| ||||||||||||
| A2BP1 | 16 | rs716508 | 39 | 28 | All | 35 | 35 | 35 | 0.09 | 0.94 | 0.58–1.52 | 0.80 |
| Dentists | 35 | 38 | 35 | 0.69 | 0.26–1.81 | 0.38 | ||||||
| Teachers | 34 | 33 | 34 | 1.06 | 0.47–2.38 | 0.94 | ||||||
| COG5 | 7 | rs3757713 | 14 | 21 | All | 19 | 24 | 18 | 0.07 | 1.46 | 0.90–2.37 | 0.13 |
| Dentists | 19 | 23 | 19 | 1.35 | 0.51–3.54 | 0.62 | ||||||
| Teachers | 18 | 24 | 17 | 1.81 | 0.80–4.12 | 0.16 | ||||||
| COG5 | 7 | rs3815148 | 19 | 22 | All | 19 | 25 | 18 | 0.12 | 1.35 | 0.83–2.19 | 0.24 |
| Dentists | 19 | 23 | 19 | 1.37 | 0.52–3.59 | 0.60 | ||||||
| Teachers | 18 | 26 | 17 | 1.41 | 0.61–3.23 | 0.42 | ||||||
| GDF5 | 20 | rs143383 | 29 | 32 | All | 43 | 39 | 43 | 0.55 | 0.83 | 0.54–1.29 | 0.41 |
| Dentists | 43 | 38 | 43 | 0.76 | 0.29–2.00 | 0.50 | ||||||
| Teachers | 42 | 40 | 43 | 0.74 | 0.32–1.69 | 0.50 | ||||||
| HFE | 6 | rs1799945 | 8 | 18 | All | 13 | 15 | 12 | 0.53 | 1.49 | 0.80–2.76 | 0.22 |
| Dentists | 12 | 18 | 11 | 2.29 | 0.83–6.29 | 0.11 | ||||||
| Teachers | 14 | 14 | 14 | 1.41 | 0.57–3.49 | 0.48 | ||||||
| ESR1 | 6 | rs2234693 | 44 | 41 | All | 40 | 45 | 40 | 0.60 | 1.27 | 0.83–1.94 | 0.28 |
| Dentists | 41 | 45 | 40 | 1.33 | 0.48–3.70 | 0.56 | ||||||
| Teachers | 40 | 45 | 39 | 1.47 | 0.62–3.46 | 0.38 | ||||||
| ESR1 | 6 | rs9340799 | 26 | 30 | All | 25 | 31 | 25 | 0.20 | 1.39 | 0.86–2.24 | 0.19 |
| Dentists | 27 | 23 | 27 | 0.50 | 0.19–1.33 | 0.15 | ||||||
| Teachers | 24 | 36 | 22 |
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| PTGS2 | 1 | rs4140564 | 4 | 8 | All | 7 | 4 | 7 | 0.35 | 0.53 | 0.18–1.56 | 0.22 |
| Dentists | 6 | 0 | 6 | – | – | – | ||||||
| Teachers | 8 | 7 | 8 | 0.83 | 0.26–2.64 | 0.73 | ||||||
| PARD3B | 2 | rs1207421 | 13 | 9 | All | 10 | 10 | 10 | 1.00 | 0.91 | 0.45–1.87 | 0.80 |
| Dentists | 10 | 10 | 10 | 0.90 | 0.28–2.93 | 0.84 | ||||||
| Teachers | 10 | 10 | 10 | 0.79 | 0.27–2.25 | 0.68 | ||||||
| DVWA | 3 | rs7639618 | 26 | 18 | All | 16 | 14 | 16 | 0.95 | 0.93 | 0.50–1.71 | 0.81 |
| Dentists | 18 | 13 | 18 | 0.81 | 0.27–2.36 | 0.70 | ||||||
| Teachers | 14 | 16 | 14 | 1.02 | 0.42–2.52 | 0.97 | ||||||
| HLA | 6 | rs10947262 | 17 | 6 | All | 14 | 13 | 14 | 0.68 | 0.90 | 0.48–1.68 | 0.74 |
| Dentists | 15 | 20 | 14 | 1.78 | 0.67–4.71 | 0.25 | ||||||
| Teachers | 14 | 9 | 14 | 0.59 | 0.21–1.64 | 0.32 | ||||||
| BCAP29 | 7 | rs10953541 | 14 | 27 | All | 26 | 32 | 25 | 0.18 | 1.36 | 0.86–2.15 | 0.19 |
| Dentists | 27 | 28 | 27 | 1.07 | 0.42–2.77 | 0.99 | ||||||
| Teachers | 24 | 35 | 23 | 1.64 | 0.73–3.65 | 0.21 | ||||||
| DUS4L | 7 | rs4730250 | 12 | 17 | All | 15 | 20 | 15 | 0.23 | 1.44 | 0.84–2.45 | 0.19 |
| Dentists | 16 | 20 | 16 | 1.76 | 0.66–4.65 | 0.31 | ||||||
| Teachers | 14 | 21 | 14 | 1.49 | 0.63–3.50 | 0.34 | ||||||
| TRIB1 | 8 | rs4512391 | 38 | 41 | All | 26 | 20 | 27 | 0.95 | 0.67 | 0.39–1.15 | 0.14 |
| Dentists | 27 | 25 | 28 | 0.99 | 0.39–2.53 | 0.96 | ||||||
| Teachers | 25 | 17 | 26 | 0.53 | 0.22–1.23 | 0.13 | ||||||
| DIO2 | 14 | rs225014 | 42 | 39 | All | 28 | 31 | 28 | 0.10 | 1.13 | 0.69–1.85 | 0.63 |
| Dentists | 28 | 35 | 27 | 1.76 | 0.66–4.68 | 0.28 | ||||||
| Teachers | 28 | 28 | 29 | 0.92 | 0.41–2.04 | 0.79 | ||||||
| TGFB1 | 19 | rs1800470/rs1982073 | 44 | NA | All | 29 | 40 | 28 | 0.58 |
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| Dentists | 31 | 40 | 30 | 1.57 | 0.60–4.09 | 0.36 | ||||||
| Teachers | 28 | 40 | 26 |
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Logistic regression analysis with log-additive model in group “All”, and dominant model in groups “Dentists” and “Teachers”.
ORs and 95% CIs are adjusted for age, occupation and body mass index (BMI) in group “All” and for age and BMI in groups “Dentists” and “Teachers”.
NCBI-population is 1000 genomes.
HapMap population is CEU: Utah residents with Northern and Western European ancestry from the CEPH collection.
Individual and joint effect of selected SNPs on ROA and symptomatic DIP OA.
| ROA | Symptomatic DIP OA | |||||||||
| N | OR | 95% CI | p-value | N | OR | 95% CI | p-value | |||
|
|
|
| 0.034 | 0.54 | ||||||
| No | No | 74/277 | 1.00 | 21/277 | 1.00 | |||||
| Yes | No | 11/27 |
|
| 3/27 | 2.20 | 0.57–6.40 | |||
| No | Yes | 30/88 | 1.53 | 0.89–2.65 | 8/88 | 1.24 | 0.51–3.00 | |||
| Yes | Yes | 45/149 | 1.24 | 0.78–1.97 | 17/149 | 1.62 | 0.80 –3.26 | |||
| Carriage of COG5 C or BCAP29 T allele | 86/264 |
|
| 28/264 | 1.55 | 0.93–2.58 | ||||
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| 0.19 | 0.096 | ||||||
| No | No | 63/237 | 1.00 | 15/237 | 1.00 | |||||
| Yes | No | 21/60 | 1.60 | 0.84–3.03 | 9/60 |
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| No | Yes | 58/180 | 1.34 | 0.86–2.11 | 19/180 | 1.86 | 0.89–3.87 | |||
| Yes | Yes | 18/65 | 1.16 | 0.61–2.21 | 6/65 | 1.77 | 0.63 –4.95 | |||
| Carriage of HFE G or ESR1 C allele | 97/305 | 1.35 | 0.98–1.86 | 34/305 |
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*p-value for interaction; ORs and 95% CIs are adjusted for age, occupation and body mass index.