Literature DB >> 24825349

Playing TETris with DNA modifications.

Benjamin Delatte1, Rachel Deplus1, François Fuks2.   

Abstract

Methylation of the fifth carbon of cytosine was the first epigenetic modification to be discovered in DNA. Recently, three new DNA modifications have come to light: hydroxymethylcytosine, formylcytosine, and carboxylcytosine, all generated by oxidation of methylcytosine by Ten Eleven Translocation (TET) enzymes. These modifications can initiate full DNA demethylation, but they are also likely to participate, like methylcytosine, in epigenetic signalling per se. A scenario is emerging in which coordinated regulation at multiple levels governs the participation of TETs in a wide range of physiological functions, sometimes via a mechanism unrelated to their enzymatic activity. Although still under construction, a sophisticated picture is rapidly forming where, according to the function to be performed, TETs ensure epigenetic marking to create specific landscapes, and whose improper build-up can lead to diseases such as cancer and neurodegenerative disorders.
© 2014 The Authors.

Entities:  

Keywords:  DNA modifications; TET proteins; epigenetics; human diseases; hydroxymethylation

Mesh:

Substances:

Year:  2014        PMID: 24825349      PMCID: PMC4198024          DOI: 10.15252/embj.201488290

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  124 in total

1.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

2.  HCV infection and miravirsen.

Authors:  Harry L A Janssen; Sakari Kauppinen; Michael R Hodges
Journal:  N Engl J Med       Date:  2013-08-29       Impact factor: 91.245

Review 3.  B lymphocyte lineage specification, commitment and epigenetic control of transcription by early B cell factor 1.

Authors:  James Hagman; Julita Ramírez; Kara Lukin
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

4.  Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.

Authors:  Lulu Hu; Ze Li; Jingdong Cheng; Qinhui Rao; Wei Gong; Mengjie Liu; Yujiang Geno Shi; Jiayu Zhu; Ping Wang; Yanhui Xu
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

5.  Early-stage epigenetic modification during somatic cell reprogramming by Parp1 and Tet2.

Authors:  Claudia A Doege; Keiichi Inoue; Toru Yamashita; David B Rhee; Skylar Travis; Ryousuke Fujita; Paolo Guarnieri; Govind Bhagat; William B Vanti; Alan Shih; Ross L Levine; Sara Nik; Emily I Chen; Asa Abeliovich
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

6.  UDP-N-acetylglucosaminyl transferase (OGT) in brain tissue: temperature sensitivity and subcellular distribution of cytosolic and nuclear enzyme.

Authors:  Ryo Okuyama; Stephen Marshall
Journal:  J Neurochem       Date:  2003-09       Impact factor: 5.372

7.  Ten-eleven translocation 1 (Tet1) is regulated by O-linked N-acetylglucosamine transferase (Ogt) for target gene repression in mouse embryonic stem cells.

Authors:  Feng-Tao Shi; Hyeung Kim; Weisi Lu; Quanyuan He; Dan Liu; Margaret A Goodell; Ma Wan; Zhou Songyang
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

Review 8.  In focus: MLL-rearranged leukemia.

Authors:  J de Boer; V Walf-Vorderwülbecke; O Williams
Journal:  Leukemia       Date:  2013-03-21       Impact factor: 11.528

9.  Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.

Authors:  Wei Xu; Hui Yang; Ying Liu; Ying Yang; Ping Wang; Se-Hee Kim; Shinsuke Ito; Chen Yang; Pu Wang; Meng-Tao Xiao; Li-xia Liu; Wen-qing Jiang; Jing Liu; Jin-ye Zhang; Bin Wang; Stephen Frye; Yi Zhang; Yan-hui Xu; Qun-ying Lei; Kun-Liang Guan; Shi-min Zhao; Yue Xiong
Journal:  Cancer Cell       Date:  2011-01-18       Impact factor: 38.585

10.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962

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  53 in total

1.  p53-Suppressed Oncogene TET1 Prevents Cellular Aging in Lung Cancer.

Authors:  Piotr T Filipczak; Shuguang Leng; Carmen S Tellez; Kieu C Do; Marcie J Grimes; Cynthia L Thomas; Stephanie R Walton-Filipczak; Maria A Picchi; Steven A Belinsky
Journal:  Cancer Res       Date:  2019-01-08       Impact factor: 12.701

Review 2.  Mitochondrial health, the epigenome and healthspan.

Authors:  Miguel A Aon; Sonia Cortassa; Magdalena Juhaszova; Steven J Sollott
Journal:  Clin Sci (Lond)       Date:  2016-08-01       Impact factor: 6.124

3.  TET2-Dependent Hydroxymethylome Plasticity Reduces Melanoma Initiation and Progression.

Authors:  Elise Bonvin; Enrico Radaelli; Martin Bizet; Flavie Luciani; Emilie Calonne; Pascale Putmans; David Nittner; Nitesh Kumar Singh; Sara Francesca Santagostino; Valérie Petit; Lionel Larue; Jean Christophe Marine; François Fuks
Journal:  Cancer Res       Date:  2018-12-11       Impact factor: 12.701

Review 4.  Pluripotent stem cell energy metabolism: an update.

Authors:  Tara Teslaa; Michael A Teitell
Journal:  EMBO J       Date:  2014-12-04       Impact factor: 11.598

5.  Altering TET dioxygenase levels within physiological range affects DNA methylation dynamics of HEK293 cells.

Authors:  Christian Grosser; Nicholas Wagner; Katrin Grothaus; Bernhard Horsthemke
Journal:  Epigenetics       Date:  2015-07-17       Impact factor: 4.528

Review 6.  Physical Exercise and Epigenetic Modifications in Skeletal Muscle.

Authors:  Manuel Widmann; Andreas M Nieß; Barbara Munz
Journal:  Sports Med       Date:  2019-04       Impact factor: 11.136

Review 7.  Formation and repair of oxidatively generated damage in cellular DNA.

Authors:  Jean Cadet; Kelvin J A Davies; Marisa Hg Medeiros; Paolo Di Mascio; J Richard Wagner
Journal:  Free Radic Biol Med       Date:  2017-01-02       Impact factor: 7.376

8.  DNA methylation analysis of human myoblasts during in vitro myogenic differentiation: de novo methylation of promoters of muscle-related genes and its involvement in transcriptional down-regulation.

Authors:  Kohei Miyata; Tomoko Miyata; Kazuhiko Nakabayashi; Kohji Okamura; Masashi Naito; Tomoko Kawai; Shuji Takada; Kiyoko Kato; Shingo Miyamoto; Kenichiro Hata; Hiroshi Asahara
Journal:  Hum Mol Genet       Date:  2014-09-04       Impact factor: 6.150

9.  Restricted TET2 Expression in Germinal Center Type B Cells Promotes Stringent Epstein-Barr Virus Latency.

Authors:  Coral K Wille; Yangguang Li; Lixin Rui; Eric C Johannsen; Shannon C Kenney
Journal:  J Virol       Date:  2017-02-14       Impact factor: 5.103

Review 10.  Assessment of PET/CT in multifocal myeloid sarcomas with loss of TET2: a case report and literature review.

Authors:  Yu Pan; Yongguang Tao; Chunyan Fu; Jiantao Jia; Shuang Liu; Desheng Xiao
Journal:  Int J Clin Exp Pathol       Date:  2015-10-01
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