Literature DB >> 24817809

Statistical label fusion with hierarchical performance models.

Andrew J Asman1, Alexander S Dagley1, Bennett A Landman2.   

Abstract

Label fusion is a critical step in many image segmentation frameworks (e.g., multi-atlas segmentation) as it provides a mechanism for generalizing a collection of labeled examples into a single estimate of the underlying segmentation. In the multi-label case, typical label fusion algorithms treat all labels equally - fully neglecting the known, yet complex, anatomical relationships exhibited in the data. To address this problem, we propose a generalized statistical fusion framework using hierarchical models of rater performance. Building on the seminal work in statistical fusion, we reformulate the traditional rater performance model from a multi-tiered hierarchical perspective. This new approach provides a natural framework for leveraging known anatomical relationships and accurately modeling the types of errors that raters (or atlases) make within a hierarchically consistent formulation. Herein, we describe several contributions. First, we derive a theoretical advancement to the statistical fusion framework that enables the simultaneous estimation of multiple (hierarchical) performance models within the statistical fusion context. Second, we demonstrate that the proposed hierarchical formulation is highly amenable to the state-of-the-art advancements that have been made to the statistical fusion framework. Lastly, in an empirical whole-brain segmentation task we demonstrate substantial qualitative and significant quantitative improvement in overall segmentation accuracy.

Entities:  

Keywords:  Hierarchical Segmentation; Label Fusion; Multi-Atlas Segmentation; Rater Performance Models; STAPLE

Year:  2014        PMID: 24817809      PMCID: PMC4013116          DOI: 10.1117/12.2043182

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  13 in total

1.  Performance-based classifier combination in atlas-based image segmentation using expectation-maximization parameter estimation.

Authors:  Torsten Rohlfing; Daniel B Russakoff; Calvin R Maurer
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

2.  Patch-based segmentation using expert priors: application to hippocampus and ventricle segmentation.

Authors:  Pierrick Coupé; José V Manjón; Vladimir Fonov; Jens Pruessner; Montserrat Robles; D Louis Collins
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

3.  Multi-organ abdominal CT segmentation using hierarchically weighted subject-specific atlases.

Authors:  Robin Wolz; Chengwen Chu; Kazunari Misawa; Kensaku Mori; Daniel Rueckert
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

4.  Formulating spatially varying performance in the statistical fusion framework.

Authors:  Andrew J Asman; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2012-03-15       Impact factor: 10.048

5.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

6.  A reproducible evaluation of ANTs similarity metric performance in brain image registration.

Authors:  Brian B Avants; Nicholas J Tustison; Gang Song; Philip A Cook; Arno Klein; James C Gee
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

7.  Estimating a reference standard segmentation with spatially varying performance parameters: local MAP STAPLE.

Authors:  Olivier Commowick; Alireza Akhondi-Asl; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2012-05-02       Impact factor: 10.048

8.  Multi-Atlas Segmentation with Joint Label Fusion.

Authors:  Hongzhi Wang; Jung W Suh; Sandhitsu R Das; John B Pluta; Caryne Craige; Paul A Yushkevich
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2012-06-26       Impact factor: 6.226

9.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

10.  STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation.

Authors:  M Jorge Cardoso; Kelvin Leung; Marc Modat; Shiva Keihaninejad; David Cash; Josephine Barnes; Nick C Fox; Sebastien Ourselin
Journal:  Med Image Anal       Date:  2013-03-01       Impact factor: 8.545

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  16 in total

1.  Reproducibility Evaluation of SLANT Whole Brain Segmentation Across Clinical Magnetic Resonance Imaging Protocols.

Authors:  Yunxi Xiong; Yuankai Huo; Jiachen Wang; L Taylor Davis; Maureen McHugo; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15

2.  Mapping Lifetime Brain Volumetry with Covariate-Adjusted Restricted Cubic Spline Regression from Cross-sectional Multi-site MRI.

Authors:  Yuankai Huo; Katherine Aboud; Hakmook Kang; Laurie E Cutting; Bennett A Landman
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

3.  Hippocampal Network Modularity Is Associated With Relational Memory Dysfunction in Schizophrenia.

Authors:  Suzanne N Avery; Baxter P Rogers; Stephan Heckers
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2018-02-22

4.  Disrupted Habituation in the Early Stage of Psychosis.

Authors:  Suzanne N Avery; Maureen McHugo; Kristan Armstrong; Jennifer U Blackford; Neil D Woodward; Stephan Heckers
Journal:  Biol Psychiatry Cogn Neurosci Neuroimaging       Date:  2019-06-27

5.  Towards Machine Learning Prediction of Deep Brain Stimulation (DBS) Intra-operative Efficacy Maps.

Authors:  Camilo Bermudez; William Rodriguez; Yuankai Huo; Allison E Hainline; Rui Li; Robert Shults; Pierre D D'Haese; Peter E Konrad; Benoit M Dawant; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03

6.  Habituation during encoding: A new approach to the evaluation of memory deficits in schizophrenia.

Authors:  Suzanne N Avery; Maureen McHugo; Kristan Armstrong; Jennifer U Blackford; Simon Vandekar; Neil D Woodward; Stephan Heckers
Journal:  Schizophr Res       Date:  2020-07-28       Impact factor: 4.939

7.  MRI correlates of chronic symptoms in mild traumatic brain injury.

Authors:  Cailey I Kerley; Kurt G Schilling; Justin Blaber; Beth Miller; Allen Newton; Adam W Anderson; Bennett A Landman; Tonia S Rex
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

8.  Hierarchical performance estimation in the statistical label fusion framework.

Authors:  Andrew J Asman; Bennett A Landman
Journal:  Med Image Anal       Date:  2014-07-04       Impact factor: 8.545

9.  Consistent cortical reconstruction and multi-atlas brain segmentation.

Authors:  Yuankai Huo; Andrew J Plassard; Aaron Carass; Susan M Resnick; Dzung L Pham; Jerry L Prince; Bennett A Landman
Journal:  Neuroimage       Date:  2016-05-13       Impact factor: 6.556

10.  Multi-atlas learner fusion: An efficient segmentation approach for large-scale data.

Authors:  Andrew J Asman; Yuankai Huo; Andrew J Plassard; Bennett A Landman
Journal:  Med Image Anal       Date:  2015-08-28       Impact factor: 8.545

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