Literature DB >> 24807111

Budding yeast for budding geneticists: a primer on the Saccharomyces cerevisiae model system.

Andrea A Duina1, Mary E Miller, Jill B Keeney.   

Abstract

The budding yeast Saccharomyces cerevisiae is a powerful model organism for studying fundamental aspects of eukaryotic cell biology. This Primer article presents a brief historical perspective on the emergence of this organism as a premier experimental system over the course of the past century. An overview of the central features of the S. cerevisiae genome, including the nature of its genetic elements and general organization, is also provided. Some of the most common experimental tools and resources available to yeast geneticists are presented in a way designed to engage and challenge undergraduate and graduate students eager to learn more about the experimental amenability of budding yeast. Finally, a discussion of several major discoveries derived from yeast studies highlights the far-reaching impact that the yeast system has had and will continue to have on our understanding of a variety of cellular processes relevant to all eukaryotes, including humans.

Entities:  

Keywords:  Saccharomyces cerevisiae; education; primer; yeast

Mesh:

Year:  2014        PMID: 24807111      PMCID: PMC4012490          DOI: 10.1534/genetics.114.163188

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  102 in total

1.  Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution.

Authors:  David A Bushnell; Patrick Cramer; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

Review 2.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification.

Authors:  O Puig; F Caspary; G Rigaut; B Rutz; E Bouveret; E Bragado-Nilsson; M Wilm; B Séraphin
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

3.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

4.  Ira Herskowitz: 1946-2003.

Authors:  David Botstein
Journal:  Genetics       Date:  2004-02       Impact factor: 4.562

5.  A low threshold level of expression of mutant-template telomerase RNA inhibits human tumor cell proliferation.

Authors:  M M Kim; M A Rivera; I L Botchkina; R Shalaby; A D Thor; E H Blackburn
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

6.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

7.  Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain.

Authors:  Rob W Van Nues; Jeremy D Brown
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

8.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

9.  Systematic screen for human disease genes in yeast.

Authors:  Lars M Steinmetz; Curt Scharfe; Adam M Deutschbauer; Dejana Mokranjac; Zelek S Herman; Ted Jones; Angela M Chu; Guri Giaever; Holger Prokisch; Peter J Oefner; Ronald W Davis
Journal:  Nat Genet       Date:  2002-07-22       Impact factor: 38.330

10.  Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms.

Authors:  David A Bushnell; Kenneth D Westover; Ralph E Davis; Roger D Kornberg
Journal:  Science       Date:  2004-02-13       Impact factor: 47.728

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  53 in total

Review 1.  Metabolic network modeling with model organisms.

Authors:  L Safak Yilmaz; Albertha Jm Walhout
Journal:  Curr Opin Chem Biol       Date:  2017-01-12       Impact factor: 8.822

Review 2.  Evolutionary biology through the lens of budding yeast comparative genomics.

Authors:  Souhir Marsit; Jean-Baptiste Leducq; Éléonore Durand; Axelle Marchant; Marie Filteau; Christian R Landry
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

3.  Targeted in Situ Mutagenesis of Histone Genes in Budding Yeast.

Authors:  Andrea A Duina; Claire E Turkal
Journal:  J Vis Exp       Date:  2017-01-26       Impact factor: 1.355

Review 4.  Biocuration at the Saccharomyces genome database.

Authors:  Marek S Skrzypek; Robert S Nash
Journal:  Genesis       Date:  2015-07-03       Impact factor: 2.487

5.  Location is everything: an educational primer for use with "genetic analysis of the ribosome biogenesis factor Ltv1 of Saccharomyces cerevisiae".

Authors:  Gretchen Edwalds-Gilbert
Journal:  Genetics       Date:  2015-02       Impact factor: 4.562

6.  A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast.

Authors:  Jessica T Stieglitz; Haixing P Kehoe; Ming Lei; James A Van Deventer
Journal:  ACS Synth Biol       Date:  2018-09-04       Impact factor: 5.110

7.  Fumarase is involved in DNA double-strand break resection through a functional interaction with Sae2.

Authors:  Michael Leshets; Dharanidharan Ramamurthy; Michael Lisby; Norbert Lehming; Ophry Pines
Journal:  Curr Genet       Date:  2017-12-04       Impact factor: 3.886

8.  How Not To Be in the Wrong Place at the Wrong Time: An Education Primer for Use with "Deposition of Centromeric Histone H3 Variant CENP-A/Cse4 into Chromatin Is Facilitated by Its C-Terminal Sumoylation".

Authors:  Yee Mon Thu
Journal:  Genetics       Date:  2020-10       Impact factor: 4.562

9.  Growth-based determination and biochemical confirmation of genetic requirements for protein degradation in Saccharomyces cerevisiae.

Authors:  Sheldon G Watts; Justin J Crowder; Samuel Z Coffey; Eric M Rubenstein
Journal:  J Vis Exp       Date:  2015-02-16       Impact factor: 1.355

10.  Analyses of Inositol Phosphates and Phosphoinositides by Strong Anion Exchange (SAX)-HPLC.

Authors:  Debabrata Laha; Marília Kamleitner; Philipp Johnen; Gabriel Schaaf
Journal:  Methods Mol Biol       Date:  2021
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