Literature DB >> 28714481

Evolutionary biology through the lens of budding yeast comparative genomics.

Souhir Marsit1, Jean-Baptiste Leducq2, Éléonore Durand1, Axelle Marchant1, Marie Filteau3, Christian R Landry1.   

Abstract

The budding yeast Saccharomyces cerevisiae is a highly advanced model system for studying genetics, cell biology and systems biology. Over the past decade, the application of high-throughput sequencing technologies to this species has contributed to this yeast also becoming an important model for evolutionary genomics. Indeed, comparative genomic analyses of laboratory, wild and domesticated yeast populations are providing unprecedented detail about many of the processes that govern evolution, including long-term processes, such as reproductive isolation and speciation, and short-term processes, such as adaptation to natural and domestication-related environments.

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Year:  2017        PMID: 28714481     DOI: 10.1038/nrg.2017.49

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  190 in total

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Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  Chromosomal variation segregates within incipient species and correlates with reproductive isolation.

Authors:  Guillaume Charron; Jean-Baptiste Leducq; Christian R Landry
Journal:  Mol Ecol       Date:  2014-08-20       Impact factor: 6.185

Review 3.  Frontiers of yeast metabolic engineering: diversifying beyond ethanol and Saccharomyces.

Authors:  Leqian Liu; Heidi Redden; Hal S Alper
Journal:  Curr Opin Biotechnol       Date:  2013-03-28       Impact factor: 9.740

Review 4.  Bread, beer and wine: yeast domestication in the Saccharomyces sensu stricto complex.

Authors:  Delphine Sicard; Jean-Luc Legras
Journal:  C R Biol       Date:  2011-02-01       Impact factor: 1.583

5.  High levels of chromosome instability in polyploids of Saccharomyces cerevisiae.

Authors:  V W Mayer; A Aguilera
Journal:  Mutat Res       Date:  1990-08       Impact factor: 2.433

Review 6.  Genomic insights into the Saccharomyces sensu stricto complex.

Authors:  Anthony R Borneman; Isak S Pretorius
Journal:  Genetics       Date:  2015-02       Impact factor: 4.562

7.  Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species.

Authors:  Hsin-Yi Lee; Jui-Yu Chou; Liplee Cheong; Nai-Hsin Chang; Shi-Yow Yang; Jun-Yi Leu
Journal:  Cell       Date:  2008-12-12       Impact factor: 41.582

8.  Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast.

Authors:  Anne Friedrich; Paul Jung; Cyrielle Reisser; Gilles Fischer; Joseph Schacherer
Journal:  Mol Biol Evol       Date:  2014-10-27       Impact factor: 16.240

9.  Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations.

Authors:  James B Anderson; Jason Funt; Dawn Anne Thompson; Snehit Prabhu; Amanda Socha; Caroline Sirjusingh; Jeremy R Dettman; Lucas Parreiras; David S Guttman; Aviv Regev; Linda M Kohn
Journal:  Curr Biol       Date:  2010-07-15       Impact factor: 10.834

10.  Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds.

Authors:  Marie Filteau; Véronique Hamel; Marie-Christine Pouliot; Isabelle Gagnon-Arsenault; Alexandre K Dubé; Christian R Landry
Journal:  Mol Syst Biol       Date:  2015-10-12       Impact factor: 11.429

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  26 in total

Review 1.  The ecology of wine fermentation: a model for the study of complex microbial ecosystems.

Authors:  C G Conacher; N A Luyt; R K Naidoo-Blassoples; D Rossouw; M E Setati; F F Bauer
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-09       Impact factor: 4.813

Review 2.  Genetic and genomic evolution of sexual reproduction: echoes from LECA to the fungal kingdom.

Authors:  Ci Fu; Marco A Coelho; Márcia David-Palma; Shelby J Priest; Joseph Heitman
Journal:  Curr Opin Genet Dev       Date:  2019-08-29       Impact factor: 5.578

3.  The neutral rate of whole-genome duplication varies among yeast species and their hybrids.

Authors:  S Marsit; M Hénault; G Charron; A Fijarczyk; C R Landry
Journal:  Nat Commun       Date:  2021-05-25       Impact factor: 14.919

4.  Unlocking the functional potential of polyploid yeasts.

Authors:  Simone Mozzachiodi; Kristoffer Krogerus; Brian Gibson; Alain Nicolas; Gianni Liti
Journal:  Nat Commun       Date:  2022-05-11       Impact factor: 17.694

5.  Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions.

Authors:  Emilien Peltier; Margaux Bernard; Marine Trujillo; Duyên Prodhomme; Jean-Christophe Barbe; Yves Gibon; Philippe Marullo
Journal:  PLoS One       Date:  2018-01-19       Impact factor: 3.240

6.  Precise control of SCRaMbLE in synthetic haploid and diploid yeast.

Authors:  Bin Jia; Yi Wu; Bing-Zhi Li; Leslie A Mitchell; Hong Liu; Shuo Pan; Juan Wang; Hao-Ran Zhang; Nan Jia; Bo Li; Michael Shen; Ze-Xiong Xie; Duo Liu; Ying-Xiu Cao; Xia Li; Xiao Zhou; Hao Qi; Jef D Boeke; Ying-Jin Yuan
Journal:  Nat Commun       Date:  2018-05-22       Impact factor: 14.919

7.  The Limits to Parapatric Speciation II: Strengthening a Preexisting Genetic Barrier to Gene Flow in Parapatry.

Authors:  Alexandre Blanckaert; Joachim Hermisson
Journal:  Genetics       Date:  2018-03-01       Impact factor: 4.562

8.  A yeast living ancestor reveals the origin of genomic introgressions.

Authors:  Melania D'Angiolo; Matteo De Chiara; Jia-Xing Yue; Agurtzane Irizar; Simon Stenberg; Karl Persson; Agnès Llored; Benjamin Barré; Joseph Schacherer; Roberto Marangoni; Eric Gilson; Jonas Warringer; Gianni Liti
Journal:  Nature       Date:  2020-11-11       Impact factor: 49.962

9.  Whole-Genome Analysis of Three Yeast Strains Used for Production of Sherry-Like Wines Revealed Genetic Traits Specific to Flor Yeasts.

Authors:  Mikhail A Eldarov; Alexey V Beletsky; Tatiana N Tanashchuk; Svetlana A Kishkovskaya; Nikolai V Ravin; Andrey V Mardanov
Journal:  Front Microbiol       Date:  2018-05-15       Impact factor: 5.640

10.  Revisiting the Taxonomic Synonyms and Populations of Saccharomyces cerevisiae-Phylogeny, Phenotypes, Ecology and Domestication.

Authors:  Ana Pontes; Mathias Hutzler; Patrícia H Brito; José Paulo Sampaio
Journal:  Microorganisms       Date:  2020-06-15
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