Literature DB >> 20871600

Phosphate release in F1-ATPase catalytic cycle follows ADP release.

Rikiya Watanabe1, Ryota Iino, Hiroyuki Noji.   

Abstract

F(1)-ATPase is an ATP-driven rotary motor protein in which the γ-subunit rotates against the catalytic stator ring. Although the reaction scheme of F(1) has mostly been revealed, the timing of inorganic phosphate (P(i)) release remains controversial. Here we addressed this issue by verifying the reversibility of ATP hydrolysis on arrested F(1) with magnetic tweezers. ATP hydrolysis was found to be essentially reversible, implying that P(i) is released after the γ rotation and ADP release, although extremely slow P(i) release was found at the ATP hydrolysis angle as an uncoupling side reaction. On the basis of this finding, we deduced the chemomechanical coupling scheme of F(1). We found that the affinity for P(i) was strongly angle dependent, implying a large contribution by P(i) release to torque generation. These findings imply that under ATP synthesis conditions, P(i) binds to an empty catalytic site, preventing solution ATP (though not ADP) from binding. Thus, this supports the concept of selective ADP binding for efficient ATP synthesis.

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Year:  2010        PMID: 20871600     DOI: 10.1038/nchembio.443

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  35 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

2.  Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis.

Authors:  R I Menz; J E Walker; A G Leslie
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

3.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

4.  Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation.

Authors:  Takayuki Nishizaka; Kazuhiro Oiwa; Hiroyuki Noji; Shigeki Kimura; Eiro Muneyuki; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Nat Struct Mol Biol       Date:  2004-01-18       Impact factor: 15.369

5.  The fluorescence spectrum of the introduced tryptophans in the alpha 3(beta F155W)3gamma subcomplex of the F1-ATPase from the thermophilic Bacillus PS3 cannot be used to distinguish between the number of nucleoside di- and triphosphates bound to catalytic sites.

Authors:  Ken Dong; Huimiao Ren; William S Allison
Journal:  J Biol Chem       Date:  2002-01-04       Impact factor: 5.157

6.  Single-molecule study on the temperature-sensitive reaction of F1-ATPase with a hybrid F1 carrying a single beta(E190D).

Authors:  Sawako Enoki; Rikiya Watanabe; Ryota Iino; Hiroyuki Noji
Journal:  J Biol Chem       Date:  2009-06-26       Impact factor: 5.157

7.  Identification of the betaTP site in the x-ray structure of F1-ATPase as the high-affinity catalytic site.

Authors:  Hui Z Mao; Joachim Weber
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

8.  In vitro mutated beta subunits from the F1-ATPase of the thermophilic bacterium, PS3, containing glutamine in place of glutamic acid in positions 190 or 201 assembles with the alpha and gamma subunits to produce inactive complexes.

Authors:  M Ohtsubo; M Yoshida; S Ohta; Y Kagawa; M Yohda; T Date
Journal:  Biochem Biophys Res Commun       Date:  1987-07-31       Impact factor: 3.575

9.  Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase.

Authors:  Venkataraman Kabaleeswaran; Neeti Puri; John E Walker; Andrew G W Leslie; David M Mueller
Journal:  EMBO J       Date:  2006-11-02       Impact factor: 11.598

10.  Temperature-sensitive reaction intermediate of F1-ATPase.

Authors:  Rikiya Watanabe; Ryota Iino; Katsuya Shimabukuro; Masasuke Yoshida; Hiroyuki Noji
Journal:  EMBO Rep       Date:  2007-12-07       Impact factor: 8.807

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  71 in total

1.  Principal role of the arginine finger in rotary catalysis of F1-ATPase.

Authors:  Yoshihito Komoriya; Takayuki Ariga; Ryota Iino; Hiromi Imamura; Daichi Okuno; Hiroyuki Noji
Journal:  J Biol Chem       Date:  2012-03-08       Impact factor: 5.157

2.  Mechanical modulation of catalytic power on F1-ATPase.

Authors:  Rikiya Watanabe; Daichi Okuno; Shouichi Sakakihara; Katsuya Shimabukuro; Ryota Iino; Masasuke Yoshida; Hiroyuki Noji
Journal:  Nat Chem Biol       Date:  2011-11-20       Impact factor: 15.040

3.  Thermodynamic efficiency and mechanochemical coupling of F1-ATPase.

Authors:  Shoichi Toyabe; Takahiro Watanabe-Nakayama; Tetsuaki Okamoto; Seishi Kudo; Eiro Muneyuki
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-13       Impact factor: 11.205

4.  Structural biology: Toward the ATP synthase mechanism.

Authors:  Joachim Weber
Journal:  Nat Chem Biol       Date:  2010-11       Impact factor: 15.040

5.  Theory for rates, equilibrium constants, and Brønsted slopes in F1-ATPase single molecule imaging experiments.

Authors:  Sándor Volkán-Kacsó; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

Review 6.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

7.  Single-molecule analysis of the rotation of F₁-ATPase under high hydrostatic pressure.

Authors:  Daichi Okuno; Masayoshi Nishiyama; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

8.  Basic properties of rotary dynamics of the molecular motor Enterococcus hirae V1-ATPase.

Authors:  Yoshihiro Minagawa; Hiroshi Ueno; Mayu Hara; Yoshiko Ishizuka-Katsura; Noboru Ohsawa; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama; Ichiro Yamato; Eiro Muneyuki; Hiroyuki Noji; Takeshi Murata; Ryota Iino
Journal:  J Biol Chem       Date:  2013-10-02       Impact factor: 5.157

9.  Catalysis-enhancement via rotary fluctuation of F1-ATPase.

Authors:  Rikiya Watanabe; Kumiko Hayashi; Hiroshi Ueno; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

10.  Torque generation mechanism of F1-ATPase upon NTP binding.

Authors:  Hidenobu C Arai; Ayako Yukawa; Ryu John Iwatate; Mako Kamiya; Rikiya Watanabe; Yasuteru Urano; Hiroyuki Noji
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

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