Literature DB >> 19270719

Ten reasons to exclude viruses from the tree of life.

David Moreira1, Purificación López-García.   

Abstract

When viruses were discovered, they were accepted as missing links between the inert world and living organisms. However, this idea was soon abandoned as information about their molecular parasitic nature accumulated. Recently, the notion that viruses are living organisms that have had a role in the evolution of some essential features of cells has experienced a renaissance owing to the discovery of unusually large and complex viruses that possess typical cellular genes. Here, we contend that there is strong evidence against the notion that viruses are alive and represent ancient lineages of the tree of life.

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Year:  2009        PMID: 19270719     DOI: 10.1038/nrmicro2108

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  53 in total

1.  A giant virus in amoebae.

Authors:  Bernard La Scola; Stéphane Audic; Catherine Robert; Liang Jungang; Xavier de Lamballerie; Michel Drancourt; Richard Birtles; Jean-Michel Claverie; Didier Raoult
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

Review 2.  The evolutionary genomics of pathogen recombination.

Authors:  Philip Awadalla
Journal:  Nat Rev Genet       Date:  2003-01       Impact factor: 53.242

3.  The 1.2-megabase genome sequence of Mimivirus.

Authors:  Didier Raoult; Stéphane Audic; Catherine Robert; Chantal Abergel; Patricia Renesto; Hiroyuki Ogata; Bernard La Scola; Marie Suzan; Jean-Michel Claverie
Journal:  Science       Date:  2004-10-14       Impact factor: 47.728

4.  Functional metagenomic profiling of nine biomes.

Authors:  Elizabeth A Dinsdale; Robert A Edwards; Dana Hall; Florent Angly; Mya Breitbart; Jennifer M Brulc; Mike Furlan; Christelle Desnues; Matthew Haynes; Linlin Li; Lauren McDaniel; Mary Ann Moran; Karen E Nelson; Christina Nilsson; Robert Olson; John Paul; Beltran Rodriguez Brito; Yijun Ruan; Brandon K Swan; Rick Stevens; David L Valentine; Rebecca Vega Thurber; Linda Wegley; Bryan A White; Forest Rohwer
Journal:  Nature       Date:  2008-03-12       Impact factor: 49.962

Review 5.  Marine viruses--major players in the global ecosystem.

Authors:  Curtis A Suttle
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

6.  Ancestral lipid biosynthesis and early membrane evolution.

Authors:  Juli Peretó; Purificación López-García; David Moreira
Journal:  Trends Biochem Sci       Date:  2004-09       Impact factor: 13.807

7.  The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life.

Authors:  George Rice; Liang Tang; Kenneth Stedman; Francisco Roberto; Josh Spuhler; Eric Gillitzer; John E Johnson; Trevor Douglas; Mark Young
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

8.  Emerging pathogens: the epidemiology and evolution of species jumps.

Authors:  Mark E J Woolhouse; Daniel T Haydon; Rustom Antia
Journal:  Trends Ecol Evol       Date:  2005-05       Impact factor: 17.712

Review 9.  Virus factories: associations of cell organelles for viral replication and morphogenesis.

Authors:  Reyes R Novoa; Gloria Calderita; Rocío Arranz; Juan Fontana; Harald Granzow; Cristina Risco
Journal:  Biol Cell       Date:  2005-02       Impact factor: 4.458

10.  Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach.

Authors:  Kirsten A Bratke; Aoife McLysaght
Journal:  BMC Evol Biol       Date:  2008-02-27       Impact factor: 3.260

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  109 in total

1.  2011 William Allan Award: development and evolution.

Authors:  John M Opitz
Journal:  Am J Hum Genet       Date:  2012-03-09       Impact factor: 11.025

2.  Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae.

Authors:  Defne Arslan; Matthieu Legendre; Virginie Seltzer; Chantal Abergel; Jean-Michel Claverie
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

3.  Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes.

Authors:  Huiquan Liu; Yanping Fu; Daohong Jiang; Guoqing Li; Jiatao Xie; Jiasen Cheng; Youliang Peng; Said A Ghabrial; Xianhong Yi
Journal:  J Virol       Date:  2010-09-01       Impact factor: 5.103

4.  Giant virus with a remarkable complement of genes infects marine zooplankton.

Authors:  Matthias G Fischer; Michael J Allen; William H Wilson; Curtis A Suttle
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

5.  Viral Symbiosis in the Origins and Evolution of Life with a Particular Focus on the Placental Mammals.

Authors:  Frank Ryan
Journal:  Results Probl Cell Differ       Date:  2020

Review 6.  Potassium ion channels: could they have evolved from viruses?

Authors:  Gerhard Thiel; Anna Moroni; Guillaume Blanc; James L Van Etten
Journal:  Plant Physiol       Date:  2013-05-29       Impact factor: 8.340

7.  Structural investigation of a viral ortholog of human NEIL2/3 DNA glycosylases.

Authors:  Aishwarya Prakash; Brian E Eckenroth; April M Averill; Kayo Imamura; Susan S Wallace; Sylvie Doublié
Journal:  DNA Repair (Amst)       Date:  2013-10-10

8.  Six comments on the ten reasons for the demotion of viruses.

Authors:  Jesús Navas-Castillo
Journal:  Nat Rev Microbiol       Date:  2009-08       Impact factor: 60.633

9.  Ten good reasons not to exclude giruses from the evolutionary picture.

Authors:  Jean-Michel Claverie; Hiroyuki Ogata
Journal:  Nat Rev Microbiol       Date:  2009-08       Impact factor: 60.633

10.  Compelling reasons why viruses are relevant for the origin of cells.

Authors:  Eugene V Koonin; Tatiana G Senkevich; Valerian V Dolja
Journal:  Nat Rev Microbiol       Date:  2009-08       Impact factor: 60.633

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