Literature DB >> 24794811

Mechanisms of genome instability induced by RNA-processing defects.

Yujia A Chan1, Philip Hieter2, Peter C Stirling3.   

Abstract

The role of normal transcription and RNA processing in maintaining genome integrity is becoming increasingly appreciated in organisms ranging from bacteria to humans. Several mutations in RNA biogenesis factors have been implicated in human cancers, but the mechanisms and potential connections to tumor genome instability are not clear. Here, we discuss how RNA-processing defects could destabilize genomes through mutagenic R-loop structures and by altering expression of genes required for genome stability. A compelling body of evidence now suggests that researchers should be directly testing these mechanisms in models of human cancer.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  R-loops; RNA processing; cancer; genome instability; transcriptome

Mesh:

Substances:

Year:  2014        PMID: 24794811      PMCID: PMC4039741          DOI: 10.1016/j.tig.2014.03.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  83 in total

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Journal:  Mol Cell       Date:  2003-09       Impact factor: 17.970

2.  DNA-RNA hybrid formation mediates RNAi-directed heterochromatin formation.

Authors:  Mina Nakama; Kei Kawakami; Takuya Kajitani; Takeshi Urano; Yota Murakami
Journal:  Genes Cells       Date:  2012-01-27       Impact factor: 1.891

3.  Mammalian polycomb-mediated repression of Hox genes requires the essential spliceosomal protein Sf3b1.

Authors:  Kyoichi Isono; Yoko Mizutani-Koseki; Toshihisa Komori; Marion S Schmidt-Zachmann; Haruhiko Koseki
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

4.  Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A.

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Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

Review 5.  Lessons from the cancer genome.

Authors:  Levi A Garraway; Eric S Lander
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6.  APOBEC3B is an enzymatic source of mutation in breast cancer.

Authors:  Michael B Burns; Lela Lackey; Michael A Carpenter; Anurag Rathore; Allison M Land; Brandon Leonard; Eric W Refsland; Delshanee Kotandeniya; Natalia Tretyakova; Jason B Nikas; Douglas Yee; Nuri A Temiz; Duncan E Donohue; Rebecca M McDougle; William L Brown; Emily K Law; Reuben S Harris
Journal:  Nature       Date:  2013-02-06       Impact factor: 49.962

7.  The yeast SEN1 gene is required for the processing of diverse RNA classes.

Authors:  D Ursic; K L Himmel; K A Gurley; F Webb; M R Culbertson
Journal:  Nucleic Acids Res       Date:  1997-12-01       Impact factor: 16.971

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Authors:  Marcin Imielinski; Alice H Berger; Peter S Hammerman; Bryan Hernandez; Trevor J Pugh; Eran Hodis; Jeonghee Cho; James Suh; Marzia Capelletti; Andrey Sivachenko; Carrie Sougnez; Daniel Auclair; Michael S Lawrence; Petar Stojanov; Kristian Cibulskis; Kyusam Choi; Luc de Waal; Tanaz Sharifnia; Angela Brooks; Heidi Greulich; Shantanu Banerji; Thomas Zander; Danila Seidel; Frauke Leenders; Sascha Ansén; Corinna Ludwig; Walburga Engel-Riedel; Erich Stoelben; Jürgen Wolf; Chandra Goparju; Kristin Thompson; Wendy Winckler; David Kwiatkowski; Bruce E Johnson; Pasi A Jänne; Vincent A Miller; William Pao; William D Travis; Harvey I Pass; Stacey B Gabriel; Eric S Lander; Roman K Thomas; Levi A Garraway; Gad Getz; Matthew Meyerson
Journal:  Cell       Date:  2012-09-14       Impact factor: 41.582

9.  Sen1p contributes to genomic integrity by regulating expression of ribonucleotide reductase 1 (RNR1) in Saccharomyces cerevisiae.

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10.  The complete spectrum of yeast chromosome instability genes identifies candidate CIN cancer genes and functional roles for ASTRA complex components.

Authors:  Peter C Stirling; Michelle S Bloom; Tejomayee Solanki-Patil; Stephanie Smith; Payal Sipahimalani; Zhijian Li; Megan Kofoed; Shay Ben-Aroya; Kyungjae Myung; Philip Hieter
Journal:  PLoS Genet       Date:  2011-04-28       Impact factor: 5.917

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  47 in total

Review 1.  Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Authors:  Gerson Rothschild; Uttiya Basu
Journal:  Trends Genet       Date:  2017-01-10       Impact factor: 11.639

Review 2.  RNA Exosome Regulates AID DNA Mutator Activity in the B Cell Genome.

Authors:  Evangelos Pefanis; Uttiya Basu
Journal:  Adv Immunol       Date:  2015-05-14       Impact factor: 3.543

Review 3.  IT'S 2 for the price of 1: Multifaceted ITS2 processing machines in RNA and DNA maintenance.

Authors:  Monica C Pillon; Yu-Hua Lo; Robin E Stanley
Journal:  DNA Repair (Amst)       Date:  2019-07-08

4.  NRDE-2, the human homolog of fission yeast Nrl1, prevents DNA damage accumulation in human cells.

Authors:  Patricia Richard; Koichi Ogami; Yaqiong Chen; Shuang Feng; James J Moresco; John R Yates; James L Manley
Journal:  RNA Biol       Date:  2018-08-02       Impact factor: 4.652

Review 5.  The functional complexity of the RNA-binding protein Yra1: mRNA biogenesis, genome stability and DSB repair.

Authors:  Valentina Infantino; Françoise Stutz
Journal:  Curr Genet       Date:  2019-07-10       Impact factor: 3.886

6.  The Polyadenosine RNA-binding Protein, Zinc Finger Cys3His Protein 14 (ZC3H14), Regulates the Pre-mRNA Processing of a Key ATP Synthase Subunit mRNA.

Authors:  Callie P Wigington; Kevin J Morris; Laura E Newman; Anita H Corbett
Journal:  J Biol Chem       Date:  2016-08-25       Impact factor: 5.157

7.  RNF168 regulates R-loop resolution and genomic stability in BRCA1/2-deficient tumors.

Authors:  Parasvi S Patel; Karan Joshua Abraham; Kiran Kumar Naidu Guturi; Marie-Jo Halaby; Zahra Khan; Luis Palomero; Brandon Ho; Shili Duan; Jonathan St-Germain; Arash Algouneh; Francesca Mateo; Samah El Ghamrasni; Haithem Barbour; Daniel R Barnes; Jonathan Beesley; Otto Sanchez; Hal K Berman; Grant W Brown; El Bachir Affar; Georgia Chenevix-Trench; Antonis C Antoniou; Cheryl H Arrowsmith; Brian Raught; Miquel Angel Pujana; Karim Mekhail; Anne Hakem; Razqallah Hakem
Journal:  J Clin Invest       Date:  2021-02-01       Impact factor: 14.808

Review 8.  Nascent Connections: R-Loops and Chromatin Patterning.

Authors:  Frédéric Chédin
Journal:  Trends Genet       Date:  2016-10-25       Impact factor: 11.639

9.  BPTF Is Essential for T Cell Homeostasis and Function.

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Journal:  J Immunol       Date:  2016-10-31       Impact factor: 5.422

10.  Canonical DNA Repair Pathways Influence R-Loop-Driven Genome Instability.

Authors:  Peter C Stirling; Philip Hieter
Journal:  J Mol Biol       Date:  2016-07-22       Impact factor: 5.469

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