Literature DB >> 31292684

The functional complexity of the RNA-binding protein Yra1: mRNA biogenesis, genome stability and DSB repair.

Valentina Infantino1, Françoise Stutz2.   

Abstract

The mRNA export adaptor Yra1 is essential in S. cerevisiae, and conserved from yeast to human (ALY/REF). It is well characterized for its function during transcription elongation, 3' processing and mRNA export. Recently, different studies linked Yra1 to genome stability showing that Yra1 overexpression causes DNA Double Strand Breaks through DNA:RNA hybrids stabilization, and that Yra1 depletion affects DSB repair. However, the mechanisms through which Yra1 contributes to genome stability maintenance are not fully understood. Interestingly, our results showed that the Yra1 C-box domain is required for Yra1 recruitment to an HO-induced irreparable DSB following extensive resection, and that it is essential to repair an HO-induced reparable DSB. Furthermore, we defined that the C-box domain of Yra1 plays a crucial role in DSB repair through homologous recombination but not through non-homologous end joining. Future studies aim at deciphering the mechanism by which Yra1 contributes to DSB repair by searching for Yra1 partners important for this process. This review focuses on the functional complexity of the Yra1 protein, not only summarizing its role in mRNA biogenesis but also emphasizing its auto-regulation and implication in genome integrity either through DNA:RNA hybrids stabilization or DNA double strand break repair in S. cerevisiae.

Entities:  

Keywords:  ALY; Double strand break (DSB) repair; Genome stability; R-loops; Transcription; Yra1; mRNA biogenesis

Mesh:

Substances:

Year:  2019        PMID: 31292684     DOI: 10.1007/s00294-019-01011-8

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  62 in total

1.  Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice-site recognition.

Authors:  P J Lopez; B Séraphin
Journal:  RNA       Date:  1999-09       Impact factor: 4.942

Review 2.  Coupling transcription, splicing and mRNA export.

Authors:  Robin Reed
Journal:  Curr Opin Cell Biol       Date:  2003-06       Impact factor: 8.382

3.  R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants.

Authors:  Peter C Stirling; Yujia A Chan; Sean W Minaker; Maria J Aristizabal; Irene Barrett; Payal Sipahimalani; Michael S Kobor; Philip Hieter
Journal:  Genes Dev       Date:  2012-01-15       Impact factor: 11.361

4.  Human mRNA export machinery recruited to the 5' end of mRNA.

Authors:  Hong Cheng; Kobina Dufu; Chung-Sheng Lee; Jeanne L Hsu; Anusha Dias; Robin Reed
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

Review 5.  R-loops: targets for nuclease cleavage and repeat instability.

Authors:  Catherine H Freudenreich
Journal:  Curr Genet       Date:  2018-01-11       Impact factor: 3.886

6.  Ubiquitin-mediated mRNP dynamics and surveillance prior to budding yeast mRNA export.

Authors:  Nahid Iglesias; Evelina Tutucci; Carole Gwizdek; Patrizia Vinciguerra; Elodie Von Dach; Anita H Corbett; Catherine Dargemont; Françoise Stutz
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

7.  YRA1 autoregulation requires nuclear export and cytoplasmic Edc3p-mediated degradation of its pre-mRNA.

Authors:  Shuyun Dong; Chunfang Li; Daniel Zenklusen; Robert H Singer; Allan Jacobson; Feng He
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

8.  Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA.

Authors:  Pascal J Preker; Christine Guthrie
Journal:  RNA       Date:  2006-04-17       Impact factor: 4.942

Review 9.  Protein Phase Separation: A New Phase in Cell Biology.

Authors:  Steven Boeynaems; Simon Alberti; Nicolas L Fawzi; Tanja Mittag; Magdalini Polymenidou; Frederic Rousseau; Joost Schymkowitz; James Shorter; Benjamin Wolozin; Ludo Van Den Bosch; Peter Tompa; Monika Fuxreiter
Journal:  Trends Cell Biol       Date:  2018-03-27       Impact factor: 20.808

10.  Differential expression of THOC1 and ALY mRNP biogenesis/export factors in human cancers.

Authors:  María S Domínguez-Sánchez; Carmen Sáez; Miguel A Japón; Andrés Aguilera; Rosa Luna
Journal:  BMC Cancer       Date:  2011-02-17       Impact factor: 4.430

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  2 in total

1.  CRISPR/Cas9-mediated point mutations improve α-amylase secretion in Saccharomyces cerevisiae.

Authors:  Yanyan Wang; Xiaowei Li; Xin Chen; Verena Siewers
Journal:  FEMS Yeast Res       Date:  2022-07-15       Impact factor: 2.923

Review 2.  R-loops as Janus-faced modulators of DNA repair.

Authors:  Aline Marnef; Gaëlle Legube
Journal:  Nat Cell Biol       Date:  2021-04-09       Impact factor: 28.824

  2 in total

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