Literature DB >> 24794425

How pervasive are circadian oscillations?

V R Patel1, K Eckel-Mahan2, P Sassone-Corsi3, P Baldi4.   

Abstract

Circadian oscillations play a critical role in coordinating the physiology, homeostasis, and behavior of biological systems. Once thought to only be controlled by a master clock, recent high-throughput experiments suggest many genes and metabolites in a cell are potentially capable of circadian oscillations. Each cell can reprogram itself and select a relatively small fraction of this broad repertoire for circadian oscillations, as a result of genetic, environmental, and even diet changes.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  circadian metabolome; circadian rhythms; circadian transcriptome; clock; coupled oscillators; oscillatory patterns

Mesh：

Substances：

Year:  2014        PMID： 24794425      PMCID： PMC4732883          DOI： 10.1016/j.tcb.2014.04.005

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN： 0962-8924            Impact factor:   20.808


  14 in total

1.  Coordinated transcription of key pathways in the mouse by the circadian clock.

Authors:  Satchidananda Panda; Marina P Antoch; Brooke H Miller; Andrew I Su; Andrew B Schook; Marty Straume; Peter G Schultz; Steve A Kay; Joseph S Takahashi; John B Hogenesch
Journal:  Cell       Date:  2002-05-03       Impact factor: 41.582

2.  Extensive and divergent circadian gene expression in liver and heart.

Authors:  Kai-Florian Storch; Ovidiu Lipan; Igor Leykin; N Viswanathan; Fred C Davis; Wing H Wong; Charles J Weitz
Journal:  Nature       Date:  2002-04-21       Impact factor: 49.962

Review 3.  The mammalian circadian timing system: organization and coordination of central and peripheral clocks.

Authors:  Charna Dibner; Ueli Schibler; Urs Albrecht
Journal:  Annu Rev Physiol       Date:  2010       Impact factor: 19.318

Review 4.  Circadian rhythms, aging, and life span in mammals.

Authors:  Oren Froy
Journal:  Physiology (Bethesda)       Date:  2011-08

5.  Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.

Authors:  Yasukazu Nakahata; Saurabh Sahar; Giuseppe Astarita; Milota Kaluzova; Paolo Sassone-Corsi
Journal:  Science       Date:  2009-03-12       Impact factor: 47.728

Review 6.  The genetics of mammalian circadian order and disorder: implications for physiology and disease.

Authors:  Joseph S Takahashi; Hee-Kyung Hong; Caroline H Ko; Erin L McDearmon
Journal:  Nat Rev Genet       Date:  2008-10       Impact factor: 53.242

7.  Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver.

Authors:  Guillaume Rey; François Cesbron; Jacques Rougemont; Hans Reinke; Michael Brunner; Felix Naef
Journal:  PLoS Biol       Date:  2011-02-22       Impact factor: 8.029

8.  Harmonics of circadian gene transcription in mammals.

Authors:  Michael E Hughes; Luciano DiTacchio; Kevin R Hayes; Christopher Vollmers; S Pulivarthy; Julie E Baggs; Satchidananda Panda; John B Hogenesch
Journal:  PLoS Genet       Date:  2009-04-03       Impact factor: 5.917

9.  Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation.

Authors:  Brooke H Miller; Erin L McDearmon; Satchidananda Panda; Kevin R Hayes; Jie Zhang; Jessica L Andrews; Marina P Antoch; John R Walker; Karyn A Esser; John B Hogenesch; Joseph S Takahashi
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

10.  Analysis of gene regulatory networks in the mammalian circadian rhythm.

Authors:  Jun Yan; Haifang Wang; Yuting Liu; Chunxuan Shao
Journal:  PLoS Comput Biol       Date:  2008-10-10       Impact factor: 4.475
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  9 in total

1.  Effects of aging on circadian patterns of gene expression in the human prefrontal cortex.

Authors:  Cho-Yi Chen; Ryan W Logan; Tianzhou Ma; David A Lewis; George C Tseng; Etienne Sibille; Colleen A McClung
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

2.  Chromatin landscape and circadian dynamics: Spatial and temporal organization of clock transcription.

Authors:  Lorena Aguilar-Arnal; Paolo Sassone-Corsi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-05       Impact factor: 11.205

3.  The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework.

Authors:  Vishal R Patel; Nicholas Ceglia; Michael Zeller; Kristin Eckel-Mahan; Paolo Sassone-Corsi; Pierre Baldi
Journal:  Bioinformatics       Date:  2015-06-06       Impact factor: 6.937

Review 4.  Yin-yang actions of histone methylation regulatory complexes in the brain.

Authors:  Patricia Marie Garay; Margarete Aryanka Wallner; Shigeki Iwase
Journal:  Epigenomics       Date:  2016-11-18       Impact factor: 4.778

Review 5.  Towards a systems view of IBS.

Authors:  Emeran A Mayer; Jennifer S Labus; Kirsten Tillisch; Steven W Cole; Pierre Baldi
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2015-08-25       Impact factor: 46.802

Review 6.  Biological Rhythms in the Skin.

Authors:  Mary S Matsui; Edward Pelle; Kelly Dong; Nadine Pernodet
Journal:  Int J Mol Sci       Date:  2016-05-24       Impact factor: 5.923

7.  Comparative Analysis of Vertebrate Diurnal/Circadian Transcriptomes.

Authors:  Greg Boyle; Kerstin Richter; Henry D Priest; David Traver; Todd C Mockler; Jeffrey T Chang; Steve A Kay; Ghislain Breton
Journal:  PLoS One       Date:  2017-01-11       Impact factor: 3.240

8.  Alleviating insomnia should decrease the risk of irritable bowel syndrome: Evidence from Mendelian randomization.

Authors:  Wenzhao Bao; Li Qi; Yin Bao; Sai Wang; Wei Li
Journal:  Front Pharmacol       Date:  2022-08-16       Impact factor: 5.988

9.  Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System.

Authors:  Mathias Foo; David E Somers; Pan-Jun Kim
Journal:  PLoS Comput Biol       Date:  2016-02-01       Impact factor: 4.475
  9 in total

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