Literature DB >> 25378702

Chromatin landscape and circadian dynamics: Spatial and temporal organization of clock transcription.

Lorena Aguilar-Arnal1, Paolo Sassone-Corsi2.   

Abstract

Circadian rhythms drive the temporal organization of a wide variety of physiological and behavioral functions in ∼24-h cycles. This control is achieved through a complex program of gene expression. In mammals, the molecular clock machinery consists of interconnected transcriptional-translational feedback loops that ultimately ensure the proper oscillation of thousands of genes in a tissue-specific manner. To achieve circadian transcriptional control, chromatin remodelers serve the clock machinery by providing appropriate oscillations to the epigenome. Recent findings have revealed the presence of circadian interactomes, nuclear "hubs" of genome topology where coordinately expressed circadian genes physically interact in a spatial and temporal-specific manner. Thus, a circadian nuclear landscape seems to exist, whose interplay with metabolic pathways and clock regulators translates into specific transcriptional programs. Deciphering the molecular mechanisms that connect the circadian clock machinery with the nuclear landscape will reveal yet unexplored pathways that link cellular metabolism to epigenetic control.

Keywords:  chromatin; circadian rhythms; epigenetics; nuclear organization

Mesh:

Substances:

Year:  2014        PMID: 25378702      PMCID: PMC4460512          DOI: 10.1073/pnas.1411264111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  120 in total

Review 1.  A decade of 3C technologies: insights into nuclear organization.

Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

2.  Connecting threads: epigenetics and metabolism.

Authors:  Sayako Katada; Axel Imhof; Paolo Sassone-Corsi
Journal:  Cell       Date:  2012-01-20       Impact factor: 41.582

3.  Histone lysine demethylase JARID1a activates CLOCK-BMAL1 and influences the circadian clock.

Authors:  Luciano DiTacchio; Hiep D Le; Christopher Vollmers; Megumi Hatori; Michael Witcher; Julie Secombe; Satchidananda Panda
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

4.  A molecular mechanism for circadian clock negative feedback.

Authors:  Hao A Duong; Maria S Robles; Darko Knutti; Charles J Weitz
Journal:  Science       Date:  2011-06-17       Impact factor: 47.728

5.  Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements.

Authors:  Ofir Hakim; Myong-Hee Sung; Ty C Voss; Erik Splinter; Sam John; Peter J Sabo; Robert E Thurman; John A Stamatoyannopoulos; Wouter de Laat; Gordon L Hager
Journal:  Genome Res       Date:  2011-04-06       Impact factor: 9.043

6.  A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism.

Authors:  Dan Feng; Tao Liu; Zheng Sun; Anne Bugge; Shannon E Mullican; Theresa Alenghat; X Shirley Liu; Mitchell A Lazar
Journal:  Science       Date:  2011-03-11       Impact factor: 47.728

7.  Circadian acetylome reveals regulation of mitochondrial metabolic pathways.

Authors:  Selma Masri; Vishal R Patel; Kristin L Eckel-Mahan; Shahaf Peleg; Ignasi Forne; Andreas G Ladurner; Pierre Baldi; Axel Imhof; Paolo Sassone-Corsi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

8.  Pharmacological modulation of circadian rhythms by synthetic activators of the deacetylase SIRT1.

Authors:  Marina M Bellet; Yasukazu Nakahata; Mohamed Boudjelal; Emma Watts; Danuta E Mossakowska; Kenneth A Edwards; Marlene Cervantes; Giuseppe Astarita; Christine Loh; James L Ellis; George P Vlasuk; Paolo Sassone-Corsi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

9.  Three-dimensional folding and functional organization principles of the Drosophila genome.

Authors:  Tom Sexton; Eitan Yaffe; Ephraim Kenigsberg; Frédéric Bantignies; Benjamin Leblanc; Michael Hoichman; Hugues Parrinello; Amos Tanay; Giacomo Cavalli
Journal:  Cell       Date:  2012-01-19       Impact factor: 41.582

10.  Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver.

Authors:  Guillaume Rey; François Cesbron; Jacques Rougemont; Hans Reinke; Michael Brunner; Felix Naef
Journal:  PLoS Biol       Date:  2011-02-22       Impact factor: 8.029

View more
  29 in total

1.  Epigenetic changes in the developing brain: Effects on behavior.

Authors:  Eric B Keverne; Donald W Pfaff; Inna Tabansky
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-02       Impact factor: 11.205

Review 2.  Origins of human disease: the chrono-epigenetic perspective.

Authors:  Edward Saehong Oh; Art Petronis
Journal:  Nat Rev Genet       Date:  2021-04-26       Impact factor: 53.242

3.  Spatial dynamics of SIRT1 and the subnuclear distribution of NADH species.

Authors:  Lorena Aguilar-Arnal; Suman Ranjit; Chiara Stringari; Ricardo Orozco-Solis; Enrico Gratton; Paolo Sassone-Corsi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

4.  Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Authors:  Jennifer M Hurley; Meaghan S Jankowski; Hannah De Los Santos; Alexander M Crowell; Samuel B Fordyce; Jeremy D Zucker; Neeraj Kumar; Samuel O Purvine; Errol W Robinson; Anil Shukla; Erika Zink; William R Cannon; Scott E Baker; Jennifer J Loros; Jay C Dunlap
Journal:  Cell Syst       Date:  2018-12-12       Impact factor: 10.304

5.  Chromatin Dynamics of Circadian Transcription.

Authors:  Lorena Aguilar-Arnal; Paolo Sassone-Corsi
Journal:  Curr Mol Biol Rep       Date:  2015-02-06

6.  Epigenetic Signaling in Glia Controls Presynaptic Homeostatic Plasticity.

Authors:  Tingting Wang; Danielle T Morency; Nathan Harris; Graeme W Davis
Journal:  Neuron       Date:  2019-12-03       Impact factor: 17.173

Review 7.  NAD+ metabolism: pathophysiologic mechanisms and therapeutic potential.

Authors:  Na Xie; Lu Zhang; Wei Gao; Canhua Huang; Peter Ernst Huber; Xiaobo Zhou; Changlong Li; Guobo Shen; Bingwen Zou
Journal:  Signal Transduct Target Ther       Date:  2020-10-07

Review 8.  Circadian Mechanisms in Alcohol Use Disorder and Tissue Injury.

Authors:  Booker T Davis; Robin M Voigt; Maliha Shaikh; Christopher B Forsyth; Ali Keshavarzian
Journal:  Alcohol Clin Exp Res       Date:  2018-03-08       Impact factor: 3.455

Review 9.  Circadian blueprint of metabolic pathways in the brain.

Authors:  Carolina Magdalen Greco; Paolo Sassone-Corsi
Journal:  Nat Rev Neurosci       Date:  2019-02       Impact factor: 34.870

Review 10.  Transcriptional architecture of the mammalian circadian clock.

Authors:  Joseph S Takahashi
Journal:  Nat Rev Genet       Date:  2016-12-19       Impact factor: 53.242

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.