Literature DB >> 24766809

Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.

Ender Karaca1, Stefan Weitzer2, Davut Pehlivan1, Hiroshi Shiraishi2, Tasos Gogakos3, Toshikatsu Hanada4, Shalini N Jhangiani5, Wojciech Wiszniewski1, Marjorie Withers1, Ian M Campbell1, Serkan Erdin6, Sedat Isikay7, Luis M Franco8, Claudia Gonzaga-Jauregui1, Tomasz Gambin1, Violet Gelowani1, Jill V Hunter9, Gozde Yesil10, Erkan Koparir11, Sarenur Yilmaz12, Miguel Brown3, Daniel Briskin3, Markus Hafner3, Pavel Morozov3, Thalia A Farazi3, Christian Bernreuther13, Markus Glatzel13, Siegfried Trattnig14, Joachim Friske14, Claudia Kronnerwetter14, Matthew N Bainbridge5, Alper Gezdirici11, Mehmet Seven11, Donna M Muzny5, Eric Boerwinkle15, Mustafa Ozen11, Tim Clausen16, Thomas Tuschl3, Adnan Yuksel11, Andreas Hess17, Richard A Gibbs18, Javier Martinez19, Josef M Penninger20, James R Lupski21.   

Abstract

CLP1 is a RNA kinase involved in tRNA splicing. Recently, CLP1 kinase-dead mice were shown to display a neuromuscular disorder with loss of motor neurons and muscle paralysis. Human genome analyses now identified a CLP1 homozygous missense mutation (p.R140H) in five unrelated families, leading to a loss of CLP1 interaction with the tRNA splicing endonuclease (TSEN) complex, largely reduced pre-tRNA cleavage activity, and accumulation of linear tRNA introns. The affected individuals develop severe motor-sensory defects, cortical dysgenesis, and microcephaly. Mice carrying kinase-dead CLP1 also displayed microcephaly and reduced cortical brain volume due to the enhanced cell death of neuronal progenitors that is associated with reduced numbers of cortical neurons. Our data elucidate a neurological syndrome defined by CLP1 mutations that impair tRNA splicing. Reduction of a founder mutation to homozygosity illustrates the importance of rare variations in disease and supports the clan genomics hypothesis.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24766809      PMCID: PMC4146440          DOI: 10.1016/j.cell.2014.02.058

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  31 in total

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Authors:  Adam B Olshen; E S Venkatraman; Robert Lucito; Michael Wigler
Journal:  Biostatistics       Date:  2004-10       Impact factor: 5.899

Review 2.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

3.  Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration.

Authors:  Jeong Woong Lee; Kirk Beebe; Leslie A Nangle; Jaeseon Jang; Chantal M Longo-Guess; Susan A Cook; Muriel T Davisson; John P Sundberg; Paul Schimmel; Susan L Ackerman
Journal:  Nature       Date:  2006-08-13       Impact factor: 49.962

4.  Mutations in VRK1 associated with complex motor and sensory axonal neuropathy plus microcephaly.

Authors:  Claudia Gonzaga-Jauregui; Timothy Lotze; Leila Jamal; Samantha Penney; Ian M Campbell; Davut Pehlivan; Jill V Hunter; Suzanne L Woodbury; Gerald Raymond; Adekunle M Adesina; Shalini N Jhangiani; Jeffrey G Reid; Donna M Muzny; Eric Boerwinkle; James R Lupski; Richard A Gibbs; Wojciech Wiszniewski
Journal:  JAMA Neurol       Date:  2013-12       Impact factor: 18.302

5.  p53 downregulates its activating vaccinia-related kinase 1, forming a new autoregulatory loop.

Authors:  Alberto Valbuena; Francisco M Vega; Sandra Blanco; Pedro A Lazo
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

6.  Disrupted function and axonal distribution of mutant tyrosyl-tRNA synthetase in dominant intermediate Charcot-Marie-Tooth neuropathy.

Authors:  Albena Jordanova; Joy Irobi; Florian P Thomas; Patrick Van Dijck; Kris Meerschaert; Maarten Dewil; Ines Dierick; An Jacobs; Els De Vriendt; Velina Guergueltcheva; Chitharanjan V Rao; Ivailo Tournev; Francisco A A Gondim; Marc D'Hooghe; Veerle Van Gerwen; Patrick Callaerts; Ludo Van Den Bosch; Jean-Pièrre Timmermans; Wim Robberecht; Jan Gettemans; Johan M Thevelein; Peter De Jonghe; Ivo Kremensky; Vincent Timmerman
Journal:  Nat Genet       Date:  2006-01-22       Impact factor: 38.330

7.  The human gene mutation database.

Authors:  D N Cooper; E V Ball; M Krawczak
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

8.  Pontocerebellar hypoplasia: clinical, pathologic, and genetic studies.

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Journal:  Neurology       Date:  2010-10-19       Impact factor: 9.910

9.  Glycyl tRNA synthetase mutations in Charcot-Marie-Tooth disease type 2D and distal spinal muscular atrophy type V.

Authors:  Anthony Antonellis; Rachel E Ellsworth; Nyamkhishig Sambuughin; Imke Puls; Annette Abel; Shih-Queen Lee-Lin; Albena Jordanova; Ivo Kremensky; Kyproula Christodoulou; Lefkos T Middleton; Kumaraswamy Sivakumar; Victor Ionasescu; Benoit Funalot; Jeffery M Vance; Lev G Goldfarb; Kenneth H Fischbeck; Eric D Green
Journal:  Am J Hum Genet       Date:  2003-04-10       Impact factor: 11.025

10.  Head circumference reference data: birth to 18 years.

Authors:  A F Roche; D Mukherjee; S M Guo; W M Moore
Journal:  Pediatrics       Date:  1987-05       Impact factor: 7.124

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  92 in total

1.  Huntington's disease brain-derived small RNAs recapitulate associated neuropathology in mice.

Authors:  Jordi Creus-Muncunill; Anna Guisado-Corcoll; Veronica Venturi; Lorena Pantano; Georgia Escaramís; Marta García de Herreros; Maria Solaguren-Beascoa; Ana Gámez-Valero; Cristina Navarrete; Mercè Masana; Franc Llorens; Daniela Diaz-Lucena; Esther Pérez-Navarro; Eulàlia Martí
Journal:  Acta Neuropathol       Date:  2021-02-06       Impact factor: 17.088

Review 2.  The genetics of cerebellar malformations.

Authors:  Kimberly A Aldinger; Dan Doherty
Journal:  Semin Fetal Neonatal Med       Date:  2016-05-07       Impact factor: 3.926

3.  Germ-line and somatic DICER1 mutations in pineoblastoma.

Authors:  Leanne de Kock; Nelly Sabbaghian; Harriet Druker; Evan Weber; Nancy Hamel; Suzanne Miller; Catherine S Choong; Nicholas G Gottardo; Ursula R Kees; Surya P Rednam; Liselotte P van Hest; Marjolijn C Jongmans; Shalini Jhangiani; James R Lupski; Margaret Zacharin; Dorothée Bouron-Dal Soglio; Annie Huang; John R Priest; Arie Perry; Sabine Mueller; Steffen Albrecht; David Malkin; Richard G Grundy; William D Foulkes
Journal:  Acta Neuropathol       Date:  2014-07-15       Impact factor: 17.088

4.  Dosage changes of a segment at 17p13.1 lead to intellectual disability and microcephaly as a result of complex genetic interaction of multiple genes.

Authors:  Claudia M B Carvalho; Shivakumar Vasanth; Marwan Shinawi; Chad Russell; Melissa B Ramocki; Chester W Brown; Jesper Graakjaer; Anne-Bine Skytte; Angela M Vianna-Morgante; Ana C V Krepischi; Gayle S Patel; LaDonna Immken; Kyrieckos Aleck; Cynthia Lim; Sau Wai Cheung; Carla Rosenberg; Nicholas Katsanis; James R Lupski
Journal:  Am J Hum Genet       Date:  2014-11-06       Impact factor: 11.025

Review 5.  Novel RNA modifications in the nervous system: form and function.

Authors:  John S Satterlee; Maria Basanta-Sanchez; Sandra Blanco; Jin Billy Li; Kate Meyer; Jonathan Pollock; Ghazaleh Sadri-Vakili; Agnieszka Rybak-Wolf
Journal:  J Neurosci       Date:  2014-11-12       Impact factor: 6.167

Review 6.  Emerging roles of tRNA in adaptive translation, signalling dynamics and disease.

Authors:  Sebastian Kirchner; Zoya Ignatova
Journal:  Nat Rev Genet       Date:  2014-12-23       Impact factor: 53.242

7.  Comparative parallel analysis of RNA ends identifies mRNA substrates of a tRNA splicing endonuclease-initiated mRNA decay pathway.

Authors:  Jennifer E Hurtig; Michelle A Steiger; Vinay K Nagarajan; Tao Li; Ti-Chun Chao; Kuang-Lei Tsai; Ambro van Hoof
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-09       Impact factor: 11.205

8.  Transfer RNA as a source of small functional RNA.

Authors:  Megumi Shigematsu; Shozo Honda; Yohei Kirino
Journal:  J Mol Biol Mol Imaging       Date:  2014

9.  The cyclic phosphodiesterase CNP and RNA cyclase RtcA fine-tune noncanonical XBP1 splicing during ER stress.

Authors:  Irem Unlu; Yanyan Lu; Xiaozhong Wang
Journal:  J Biol Chem       Date:  2018-10-24       Impact factor: 5.157

10.  Clinical genomics and contextualizing genome variation in the diagnostic laboratory.

Authors:  James R Lupski; Pengfei Liu; Pawel Stankiewicz; Claudia M B Carvalho; Jennifer E Posey
Journal:  Expert Rev Mol Diagn       Date:  2020-10-10       Impact factor: 5.225

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