Literature DB >> 26389128

Transfer RNA as a source of small functional RNA.

Megumi Shigematsu, Shozo Honda, Yohei Kirino.   

Abstract

Since their discovery in the 1950s, transfer RNAs (tRNAs) have been best known as adapter molecules that play a central role in translating genetic information. However, recent biochemical and bioinformatic evidence has led to a previously unexpected conceptual consensus that tRNAs are not always end products; they further serve as a source of small functional RNAs. In many organisms, specific tRNA fragments are produced from mature tRNAs or their precursor transcripts not as random degradation products, but as functional molecules involved in many biological processes beyond translation. In this review, we summarize recent studies of tRNA fragments that have provided new insights into tRNA biology by examining the molecular functions of tRNA fragments and proteins with which they interact.

Entities:  

Keywords:  Argonaute; tRF; tRNA; tRNA fragment; tRNA half

Year:  2014        PMID: 26389128      PMCID: PMC4572697     

Source DB:  PubMed          Journal:  J Mol Biol Mol Imaging


  74 in total

1.  Gene silencing by the tRNA maturase tRNase ZL under the direction of small-guide RNA.

Authors:  A Nakashima; H Takaku; H S Shibata; Y Negishi; M Takagi; M Tamura; M Nashimoto
Journal:  Gene Ther       Date:  2006-08-03       Impact factor: 5.250

Review 2.  Biogenesis of small RNAs in animals.

Authors:  V Narry Kim; Jinju Han; Mikiko C Siomi
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

3.  tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.

Authors:  Roy L Maute; Christof Schneider; Pavel Sumazin; Antony Holmes; Andrea Califano; Katia Basso; Riccardo Dalla-Favera
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-07       Impact factor: 11.205

4.  Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2.

Authors:  Mary Grace Goll; Finn Kirpekar; Keith A Maggert; Jeffrey A Yoder; Chih-Lin Hsieh; Xiaoyu Zhang; Kent G Golic; Steven E Jacobsen; Timothy H Bestor
Journal:  Science       Date:  2006-01-20       Impact factor: 47.728

5.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

Review 6.  Small silencing RNAs: an expanding universe.

Authors:  Megha Ghildiyal; Phillip D Zamore
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

7.  Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells.

Authors:  Andrew Sobala; Gyorgy Hutvagner
Journal:  RNA Biol       Date:  2013-04-01       Impact factor: 4.652

8.  Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid.

Authors:  Man Lung Yeung; Yamina Bennasser; Koichi Watashi; Shu-Yun Le; Laurent Houzet; Kuan-Teh Jeang
Journal:  Nucleic Acids Res       Date:  2009-09-03       Impact factor: 16.971

9.  Description of plant tRNA-derived RNA fragments (tRFs) associated with argonaute and identification of their putative targets.

Authors:  Guilherme Loss-Morais; Peter M Waterhouse; Rogerio Margis
Journal:  Biol Direct       Date:  2013-02-12       Impact factor: 4.540

10.  Hints of tRNA-Derived Small RNAs Role in RNA Silencing Mechanisms.

Authors:  Maria Rosa Garcia-Silva; Florencia Cabrera-Cabrera; Maria Catalina Güida; Alfonso Cayota
Journal:  Genes (Basel)       Date:  2012-10-10       Impact factor: 4.096

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  33 in total

1.  Four-leaf clover qRT-PCR: A convenient method for selective quantification of mature tRNA.

Authors:  Shozo Honda; Megumi Shigematsu; Keisuke Morichika; Aristeidis G Telonis; Yohei Kirino
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

2.  SHOT-RNAs: A novel class of tRNA-derived functional RNAs expressed in hormone-dependent cancers.

Authors:  Shozo Honda; Yohei Kirino
Journal:  Mol Cell Oncol       Date:  2015-11-23

3.  Inferring targeting modes of Argonaute-loaded tRNA fragments.

Authors:  Lingyu Guan; Spyros Karaiskos; Andrey Grigoriev
Journal:  RNA Biol       Date:  2019-10-15       Impact factor: 4.652

4.  Identification of Mitochondrial Genome-Encoded Small RNAs Related to Egg Deterioration Caused by Postovulatory Aging in Rainbow Trout.

Authors:  Hao Ma; Gregory M Weber; Hairong Wei; Jianbo Yao
Journal:  Mar Biotechnol (NY)       Date:  2016-10-24       Impact factor: 3.619

5.  Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers.

Authors:  Shozo Honda; Phillipe Loher; Megumi Shigematsu; Juan P Palazzo; Ryusuke Suzuki; Issei Imoto; Isidore Rigoutsos; Yohei Kirino
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

6.  Oxidative stress enhances the expression of 2',3'-cyclic phosphate-containing RNAs.

Authors:  Megumi Shigematsu; Yohei Kirino
Journal:  RNA Biol       Date:  2020-06-18       Impact factor: 4.652

Review 7.  Regulation of mRNA Translation in Neurons-A Matter of Life and Death.

Authors:  Mridu Kapur; Caitlin E Monaghan; Susan L Ackerman
Journal:  Neuron       Date:  2017-11-01       Impact factor: 17.173

Review 8.  Deciphering the Role of the Non-Coding Genome in Regulating Gene-Diet Interactions.

Authors:  Pui-Pik Law; Michelle L Holland
Journal:  Nutrients       Date:  2018-11-27       Impact factor: 5.717

9.  Extensive profiling of the expressions of tRNAs and tRNA-derived fragments (tRFs) reveals the complexities of tRNA and tRF populations in plants.

Authors:  Xuan Ma; Chunyan Liu; Xiaocong Kong; Jing Liu; Siju Zhang; Shanshan Liang; Weijiang Luan; Xiaofeng Cao
Journal:  Sci China Life Sci       Date:  2021-02-08       Impact factor: 6.038

10.  Of rodents and ruminants: a comparison of small noncoding RNA requirements in mouse and bovine reproduction.

Authors:  Lauren G Chukrallah; Aditi Badrinath; Kelly Seltzer; Elizabeth M Snyder
Journal:  J Anim Sci       Date:  2021-03-01       Impact factor: 3.159

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