Literature DB >> 24764844

N'-[(1E)-1-(2-Fluoro-phen-yl)ethyl-idene]pyridine-3-carbohydrazide.

P B Sreeja1, M Sithambaresan2, N Aiswarya3, M R Prathapachandra Kurup3.   

Abstract

The title compound, C14H12FN3O, adopts an E conformation with respect to the azomethine double bond whereas the N and methyl C atoms are in a Z conformation with respect to the same bond. The ketonic O and azomethine N atoms are cis to each other. The non-planar mol-ecule [the dihedral angle between the benzene rings is 7.44 (11)°] exists in an amido form with a C=O bond length of 1.221 (2) Å. In the crystal, a bifurcated N-H⋯(O,N) hydrogen bond is formed between the amide H atom and the keto O and imine N atoms of an adjacent mol-ecule, leading to the formation of chains propagating along the b-axis direction. Through a 180° rotation of the fluoro-phenyl ring, the F atom is disordered over two sites with an occupancy ratio of 0.632 (4):0.368 (4).

Entities:  

Year:  2014        PMID: 24764844      PMCID: PMC3998283          DOI: 10.1107/S1600536813035009

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological properties of hydrazones, see: Sreeja et al. (2004 ▶); Ajani et al. (2010 ▶). For the synthesis of related compounds and for related work, see: Mangalam & Kurup (2011 ▶). For a related structure, see: Nair et al. (2012 ▶). For di­fluoro­phenyl compounds, see: Nayak et al. (2012 ▶).

Experimental

Crystal data

C14H12FN3O M = 257.27 Orthorhombic, a = 18.926 (3) Å b = 8.0486 (9) Å c = 16.337 (3) Å V = 2488.6 (7) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.50 × 0.25 × 0.20 mm

Data collection

Bruker ApexII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.952, T max = 0.980 19111 measured reflections 3009 independent reflections 1755 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.161 S = 1.01 2999 reflections 188 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) Global, I. DOI: 10.1107/S1600536813035009/zl2571sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813035009/zl2571Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813035009/zl2571Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H12FN3OF(000) = 1072
Mr = 257.27Dx = 1.373 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 2433 reflections
a = 18.926 (3) Åθ = 2.5–22.6°
b = 8.0486 (9) ŵ = 0.10 mm1
c = 16.337 (3) ÅT = 296 K
V = 2488.6 (7) Å3Needle, colourless
Z = 80.50 × 0.25 × 0.20 mm
Bruker ApexII CCD diffractometer3009 independent reflections
Radiation source: fine-focus sealed tube1755 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.056
Detector resolution: 8.33 pixels mm-1θmax = 28.0°, θmin = 2.5°
ω and φ scanh = −24→25
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −10→10
Tmin = 0.952, Tmax = 0.980l = −21→21
19111 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.161w = 1/[σ2(Fo2) + (0.0806P)2 + 0.3159P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2999 reflectionsΔρmax = 0.29 e Å3
188 parametersΔρmin = −0.22 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0048 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.16369 (8)1.08491 (17)0.92895 (10)0.0564 (5)
N10.28297 (9)1.04304 (17)1.01301 (10)0.0379 (4)
N20.25250 (9)0.91485 (18)0.96943 (10)0.0384 (4)
N30.05671 (13)0.6619 (3)0.84194 (16)0.0827 (8)
F10.26405 (10)1.2489 (2)1.14815 (13)0.0557 (7)0.632 (4)
F1B0.4820 (2)1.1072 (5)1.0493 (3)0.0761 (16)0.368 (4)
C60.44269 (12)1.1919 (3)1.09238 (15)0.0533 (6)
H60.47191.11801.06460.064*0.632 (4)
C20.33059 (12)1.2728 (2)1.13857 (13)0.0447 (5)
H20.28221.25481.14300.054*0.368 (4)
C50.47260 (14)1.3288 (3)1.12899 (17)0.0672 (7)
H50.52111.34661.12590.081*
C40.43039 (15)1.4381 (3)1.16994 (18)0.0717 (8)
H40.45011.53171.19430.086*
C30.35920 (15)1.4110 (3)1.17547 (16)0.0628 (7)
H30.33051.48501.20380.075*
C10.37091 (10)1.1596 (2)1.09523 (12)0.0378 (5)
C70.33978 (10)1.0136 (2)1.05237 (12)0.0371 (4)
C80.37763 (12)0.8504 (2)1.05763 (16)0.0551 (6)
H8A0.34410.76351.06810.083*
H8B0.41160.85441.10130.083*
H8C0.40150.82891.00690.083*
C90.19212 (11)0.9487 (2)0.92867 (12)0.0386 (5)
C100.16141 (11)0.8085 (2)0.88031 (11)0.0374 (5)
C110.08970 (12)0.7822 (3)0.88351 (15)0.0545 (6)
H110.06260.85190.91640.065*
C120.09829 (18)0.5653 (4)0.79477 (19)0.0829 (9)
H120.07690.47950.76580.099*
C130.16935 (14)0.5845 (3)0.78654 (15)0.0601 (6)
H130.19540.51550.75220.072*
C140.20124 (11)0.7080 (2)0.83009 (13)0.0460 (5)
H140.24980.72420.82590.055*
H2'0.2692 (10)0.8137 (15)0.9722 (14)0.051 (6)*
U11U22U33U12U13U23
O10.0594 (10)0.0345 (8)0.0752 (12)0.0116 (7)−0.0128 (8)−0.0112 (7)
N10.0495 (10)0.0247 (7)0.0393 (9)−0.0057 (7)−0.0023 (8)−0.0022 (6)
N20.0499 (10)0.0222 (7)0.0431 (9)−0.0004 (7)−0.0070 (8)−0.0031 (6)
N30.0724 (15)0.0924 (17)0.0834 (18)−0.0245 (13)−0.0065 (13)−0.0225 (14)
F10.0434 (13)0.0599 (13)0.0639 (14)0.0009 (9)0.0058 (9)−0.0186 (10)
F1B0.053 (2)0.072 (3)0.103 (3)−0.0039 (19)0.026 (2)−0.023 (2)
C60.0507 (13)0.0508 (13)0.0583 (14)−0.0085 (11)0.0020 (11)−0.0027 (11)
C20.0508 (13)0.0406 (11)0.0426 (11)0.0015 (9)−0.0056 (10)−0.0032 (8)
C50.0579 (15)0.0559 (14)0.088 (2)−0.0180 (12)−0.0146 (14)−0.0041 (13)
C40.0798 (19)0.0495 (14)0.086 (2)−0.0141 (13)−0.0316 (16)−0.0113 (13)
C30.0851 (19)0.0412 (12)0.0621 (15)0.0095 (12)−0.0157 (13)−0.0182 (11)
C10.0479 (12)0.0306 (9)0.0347 (10)−0.0059 (8)−0.0019 (9)0.0009 (7)
C70.0423 (11)0.0307 (9)0.0384 (10)−0.0041 (8)0.0034 (9)−0.0009 (7)
C80.0528 (13)0.0374 (11)0.0751 (16)0.0050 (10)−0.0097 (12)−0.0117 (10)
C90.0479 (11)0.0262 (9)0.0417 (11)−0.0001 (8)−0.0002 (9)−0.0021 (7)
C100.0449 (11)0.0305 (9)0.0368 (10)0.0001 (8)−0.0059 (8)0.0018 (7)
C110.0489 (13)0.0561 (13)0.0584 (15)−0.0020 (11)−0.0031 (11)−0.0108 (11)
C120.106 (2)0.0739 (18)0.0687 (18)−0.0330 (18)−0.0120 (17)−0.0239 (15)
C130.0832 (18)0.0477 (12)0.0492 (13)−0.0034 (12)0.0003 (12)−0.0194 (10)
C140.0496 (12)0.0428 (11)0.0457 (12)−0.0013 (9)−0.0019 (10)−0.0070 (9)
O1—C91.221 (2)C4—C31.368 (4)
N1—C71.275 (2)C4—H40.9300
N1—N21.380 (2)C3—H30.9300
N2—C91.350 (3)C1—C71.490 (3)
N2—H2'0.875 (9)C7—C81.498 (3)
N3—C111.338 (3)C8—H8A0.9600
N3—C121.348 (4)C8—H8B0.9600
F1—C21.284 (3)C8—H8C0.9600
F1B—C61.230 (4)C9—C101.495 (3)
C6—C51.376 (3)C10—C111.375 (3)
C6—C11.384 (3)C10—C141.377 (3)
C6—H60.9300C11—H110.9300
C2—C31.376 (3)C12—C131.360 (4)
C2—C11.383 (3)C12—H120.9300
C2—H20.9300C13—C141.363 (3)
C5—C41.364 (4)C13—H130.9300
C5—H50.9300C14—H140.9300
C7—N1—N2118.26 (15)C6—C1—C7121.36 (18)
C9—N2—N1117.22 (15)N1—C7—C1115.06 (16)
C9—N2—H2'121.3 (14)N1—C7—C8126.53 (17)
N1—N2—H2'121.2 (14)C1—C7—C8118.40 (17)
C11—N3—C12115.8 (2)C7—C8—H8A109.5
F1B—C6—C5116.3 (3)C7—C8—H8B109.5
F1B—C6—C1120.6 (3)H8A—C8—H8B109.5
C5—C6—C1122.7 (2)C7—C8—H8C109.5
F1B—C6—H66.8H8A—C8—H8C109.5
C5—C6—H6118.7H8B—C8—H8C109.5
C1—C6—H6118.7O1—C9—N2123.50 (17)
F1—C2—C3117.0 (2)O1—C9—C10120.55 (18)
F1—C2—C1120.32 (19)N2—C9—C10115.94 (15)
C3—C2—C1122.6 (2)C11—C10—C14118.21 (19)
F1—C2—H22.6C11—C10—C9118.68 (18)
C3—C2—H2118.7C14—C10—C9123.06 (18)
C1—C2—H2118.7N3—C11—C10123.6 (2)
C4—C5—C6119.3 (2)N3—C11—H11118.2
C4—C5—H5120.4C10—C11—H11118.2
C6—C5—H5120.4N3—C12—C13124.6 (2)
C5—C4—C3120.4 (2)N3—C12—H12117.7
C5—C4—H4119.8C13—C12—H12117.7
C3—C4—H4119.8C12—C13—C14118.0 (2)
C4—C3—C2119.2 (2)C12—C13—H13121.0
C4—C3—H3120.4C14—C13—H13121.0
C2—C3—H3120.4C13—C14—C10119.8 (2)
C2—C1—C6115.79 (18)C13—C14—H14120.1
C2—C1—C7122.84 (18)C10—C14—H14120.1
C7—N1—N2—C9179.58 (18)C6—C1—C7—N1−135.9 (2)
F1B—C6—C5—C4172.7 (4)C2—C1—C7—C8−138.5 (2)
C1—C6—C5—C40.0 (4)C6—C1—C7—C842.9 (3)
C6—C5—C4—C30.8 (4)N1—N2—C9—O1−0.3 (3)
C5—C4—C3—C2−0.6 (4)N1—N2—C9—C10178.48 (16)
F1—C2—C3—C4177.3 (2)O1—C9—C10—C11−44.3 (3)
C1—C2—C3—C4−0.5 (4)N2—C9—C10—C11136.9 (2)
F1—C2—C1—C6−176.5 (2)O1—C9—C10—C14133.2 (2)
C3—C2—C1—C61.2 (3)N2—C9—C10—C14−45.7 (3)
F1—C2—C1—C74.8 (3)C12—N3—C11—C10−0.5 (4)
C3—C2—C1—C7−177.5 (2)C14—C10—C11—N31.6 (3)
F1B—C6—C1—C2−173.4 (3)C9—C10—C11—N3179.1 (2)
C5—C6—C1—C2−1.0 (3)C11—N3—C12—C13−1.0 (5)
F1B—C6—C1—C75.3 (4)N3—C12—C13—C141.3 (5)
C5—C6—C1—C7177.7 (2)C12—C13—C14—C10−0.1 (4)
N2—N1—C7—C1177.76 (16)C11—C10—C14—C13−1.2 (3)
N2—N1—C7—C8−0.9 (3)C9—C10—C14—C13−178.7 (2)
C2—C1—C7—N142.7 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2′···O1i0.88 (1)2.35 (1)3.163 (2)156 (2)
N2—H2′···N1i0.88 (1)2.48 (2)3.148 (2)133 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2′⋯O1i 0.88 (1)2.35 (1)3.163 (2)156 (2)
N2—H2′⋯N1i 0.88 (1)2.48 (2)3.148 (2)133 (2)

Symmetry code: (i) .

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Authors:  Neema Ani Mangalam; M R Prathapachandra Kurup
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3.  Microwave assisted synthesis and antimicrobial activity of 2-quinoxalinone-3-hydrazone derivatives.

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4.  N'-[(E)-(3-Fluoro-pyridin-2-yl)methyl-idene]benzohydrazide monohydrate.

Authors:  Yamuna Nair; M Sithambaresan; M R Prathapachandra Kurup
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1.  N'-[(E)-1-(2-Fluoro-phen-yl)ethyl-idene]pyridine-4-carbohydrazide.

Authors:  P B Sreeja; M Sithambaresan; N Aiswarya; M R Prathapachandra Kurup
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