Literature DB >> 22969597

N'-[(E)-(3-Fluoro-pyridin-2-yl)methyl-idene]benzohydrazide monohydrate.

Yamuna Nair, M Sithambaresan, M R Prathapachandra Kurup.   

Abstract

The title compound, C(13)H(10)FN(3)O·H(2)O, exists in the E conformation with respect to the azomethane C=N double bond. The mol-ecule is close to planar with a maximum deviation of 0.286 (2) Å. The pyridine ring is essentially coplanar with the central C(= O)N(2)C unit [dihedral angle = 2.02 (3)°] and the phenyl ring exhibits a dihedral angle of 14.41 (10)° with respect to the central unit. The crystal structure features O-H⋯N, N-H⋯O and O-H⋯O hydrogen-bond inter-actions between the solvent water and the benzohydrazide mol-ecules, as well as C-H⋯O hydrogen bonds and C-F⋯π [3.0833 (18) Å] inter-actions.

Entities:  

Year:  2012        PMID: 22969597      PMCID: PMC3435726          DOI: 10.1107/S1600536812035179

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of benzohydrazides as catalysts, see: Heravi et al. (2007 ▶); Hou et al. (2005 ▶) and for their biological activity, see: Sreeja et al. (2004 ▶). For the synthesis of related compounds, see: Fun et al. (2008 ▶). For related structures, see Mangalam et al. (2009 ▶).

Experimental

Crystal data

C13H10FN3O·H2O M = 261.26 Orthorhombic, a = 8.2540 (4) Å b = 11.5489 (4) Å c = 26.1962 (11) Å V = 2497.14 (18) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.964, T max = 0.974 34264 measured reflections 2192 independent reflections 1817 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.096 S = 1.07 2190 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035179/zl2494sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035179/zl2494Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812035179/zl2494Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H10FN3O·H2OF(000) = 1088
Mr = 261.26Dx = 1.390 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9884 reflections
a = 8.2540 (4) Åθ = 5.8–54.5°
b = 11.5489 (4) ŵ = 0.11 mm1
c = 26.1962 (11) ÅT = 296 K
V = 2497.14 (18) Å3Block, colorless
Z = 80.35 × 0.30 × 0.25 mm
Bruker Kappa APEXII CCD diffractometer2192 independent reflections
Radiation source: fine-focus sealed tube1817 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scanθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −9→9
Tmin = 0.964, Tmax = 0.974k = −13→13
34264 measured reflectionsl = −31→31
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0425P)2 + 0.6736P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2190 reflectionsΔρmax = 0.18 e Å3
185 parametersΔρmin = −0.13 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0073 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.75071 (13)0.87133 (8)1.09485 (3)0.0629 (3)
O10.82638 (15)1.12491 (9)0.86590 (4)0.0561 (3)
O1W0.90084 (17)0.73757 (10)0.93534 (6)0.0600 (3)
N10.60294 (15)1.12483 (10)1.03176 (5)0.0462 (3)
N20.79363 (14)1.02906 (10)0.95707 (4)0.0413 (3)
N30.88214 (15)0.97616 (11)0.91928 (4)0.0418 (3)
C10.51707 (19)1.17020 (13)1.06961 (6)0.0514 (4)
H10.46331.23971.06370.062*
C20.5032 (2)1.12006 (14)1.11710 (6)0.0562 (4)
H20.44201.15521.14250.067*
C30.5812 (2)1.01773 (15)1.12616 (6)0.0557 (4)
H30.57420.98111.15770.067*
C40.66988 (18)0.97122 (13)1.08709 (5)0.0444 (4)
C50.68155 (16)1.02434 (11)1.04024 (5)0.0392 (3)
C60.77636 (17)0.97353 (12)0.99866 (5)0.0416 (3)
H60.82370.90101.00260.050*
C70.89290 (17)1.03168 (12)0.87370 (5)0.0416 (3)
C80.99453 (17)0.97527 (13)0.83362 (5)0.0427 (3)
C91.0457 (2)0.86099 (14)0.83555 (6)0.0543 (4)
H91.01760.81480.86330.065*
C101.1385 (2)0.81533 (17)0.79643 (6)0.0664 (5)
H101.17150.73840.79780.080*
C111.1819 (2)0.88324 (18)0.75569 (7)0.0692 (5)
H111.24410.85220.72940.083*
C121.1337 (2)0.99666 (18)0.75360 (6)0.0650 (5)
H121.16451.04270.72610.078*
C131.03959 (19)1.04278 (15)0.79213 (6)0.0529 (4)
H131.00621.11960.79030.064*
H3'0.908 (2)0.9010 (16)0.9235 (6)0.057 (5)*
H1A0.838 (3)0.699 (2)0.9166 (9)0.102 (9)*
H1B0.902 (3)0.701 (2)0.9653 (9)0.100 (8)*
U11U22U33U12U13U23
F10.0738 (6)0.0639 (6)0.0511 (5)0.0185 (5)0.0040 (5)0.0128 (4)
O10.0757 (8)0.0461 (6)0.0467 (6)0.0037 (5)0.0021 (5)0.0061 (5)
O1W0.0761 (8)0.0452 (6)0.0589 (8)−0.0080 (6)0.0070 (7)0.0081 (6)
N10.0496 (7)0.0422 (7)0.0468 (7)0.0015 (5)0.0020 (6)−0.0028 (5)
N20.0454 (7)0.0418 (6)0.0366 (6)−0.0004 (5)0.0024 (5)−0.0031 (5)
N30.0500 (7)0.0406 (7)0.0348 (6)0.0017 (5)0.0046 (5)−0.0004 (5)
C10.0508 (9)0.0451 (8)0.0583 (10)0.0016 (7)0.0051 (7)−0.0096 (7)
C20.0529 (9)0.0628 (10)0.0528 (10)−0.0014 (8)0.0107 (7)−0.0155 (8)
C30.0571 (9)0.0704 (11)0.0395 (8)−0.0017 (8)0.0053 (7)−0.0008 (7)
C40.0447 (8)0.0492 (8)0.0395 (8)0.0006 (7)−0.0027 (6)−0.0008 (6)
C50.0381 (7)0.0417 (7)0.0377 (7)−0.0032 (6)−0.0013 (6)−0.0039 (6)
C60.0459 (8)0.0401 (8)0.0388 (7)0.0034 (6)−0.0001 (6)−0.0008 (6)
C70.0458 (8)0.0415 (8)0.0375 (8)−0.0089 (6)−0.0036 (6)−0.0003 (6)
C80.0421 (8)0.0527 (8)0.0333 (7)−0.0109 (6)−0.0020 (6)−0.0007 (6)
C90.0643 (10)0.0551 (9)0.0433 (8)−0.0037 (8)0.0112 (8)−0.0003 (7)
C100.0736 (12)0.0708 (11)0.0550 (10)0.0039 (9)0.0161 (9)−0.0077 (9)
C110.0611 (11)0.1001 (15)0.0463 (10)−0.0034 (10)0.0143 (8)−0.0098 (10)
C120.0576 (10)0.0987 (14)0.0386 (9)−0.0147 (10)0.0058 (7)0.0105 (9)
C130.0519 (9)0.0651 (10)0.0418 (8)−0.0110 (8)−0.0024 (7)0.0068 (7)
F1—C41.3481 (17)C4—C51.376 (2)
O1—C71.2258 (17)C5—C61.4639 (19)
O1W—H1A0.84 (3)C6—H60.9300
O1W—H1B0.89 (2)C7—C81.494 (2)
N1—C11.3266 (19)C8—C91.387 (2)
N1—C51.3480 (18)C8—C131.388 (2)
N2—C61.2721 (18)C9—C101.384 (2)
N2—N31.3736 (16)C9—H90.9300
N3—C71.3582 (18)C10—C111.372 (3)
N3—H3'0.901 (18)C10—H100.9300
C1—C21.377 (2)C11—C121.370 (3)
C1—H10.9300C11—H110.9300
C2—C31.366 (2)C12—C131.381 (2)
C2—H20.9300C12—H120.9300
C3—C41.368 (2)C13—H130.9300
C3—H30.9300
H1A—O1W—H1B105 (2)C5—C6—H6120.2
C1—N1—C5118.31 (13)O1—C7—N3122.14 (13)
C6—N2—N3116.90 (12)O1—C7—C8121.16 (13)
C7—N3—N2117.28 (12)N3—C7—C8116.67 (13)
C7—N3—H3'123.2 (11)C9—C8—C13118.79 (14)
N2—N3—H3'117.8 (11)C9—C8—C7124.09 (13)
N1—C1—C2123.60 (15)C13—C8—C7117.12 (14)
N1—C1—H1118.2C10—C9—C8120.27 (15)
C2—C1—H1118.2C10—C9—H9119.9
C3—C2—C1118.79 (14)C8—C9—H9119.9
C3—C2—H2120.6C11—C10—C9120.18 (18)
C1—C2—H2120.6C11—C10—H10119.9
C2—C3—C4117.49 (15)C9—C10—H10119.9
C2—C3—H3121.3C12—C11—C10120.13 (17)
C4—C3—H3121.3C12—C11—H11119.9
F1—C4—C3119.21 (13)C10—C11—H11119.9
F1—C4—C5118.78 (13)C11—C12—C13120.19 (16)
C3—C4—C5122.00 (14)C11—C12—H12119.9
N1—C5—C4119.81 (13)C13—C12—H12119.9
N1—C5—C6118.68 (12)C12—C13—C8120.43 (16)
C4—C5—C6121.51 (13)C12—C13—H13119.8
N2—C6—C5119.67 (12)C8—C13—H13119.8
N2—C6—H6120.2
C6—N2—N3—C7176.10 (12)N2—N3—C7—O1−0.4 (2)
C5—N1—C1—C2−0.2 (2)N2—N3—C7—C8177.81 (11)
N1—C1—C2—C3−0.2 (2)O1—C7—C8—C9−166.31 (14)
C1—C2—C3—C40.3 (2)N3—C7—C8—C915.5 (2)
C2—C3—C4—F1178.90 (14)O1—C7—C8—C1313.8 (2)
C2—C3—C4—C50.1 (2)N3—C7—C8—C13−164.45 (13)
C1—N1—C5—C40.6 (2)C13—C8—C9—C10−0.7 (2)
C1—N1—C5—C6179.89 (13)C7—C8—C9—C10179.37 (15)
F1—C4—C5—N1−179.40 (12)C8—C9—C10—C110.7 (3)
C3—C4—C5—N1−0.5 (2)C9—C10—C11—C120.1 (3)
F1—C4—C5—C61.4 (2)C10—C11—C12—C13−0.8 (3)
C3—C4—C5—C6−179.78 (14)C11—C12—C13—C80.8 (3)
N3—N2—C6—C5−179.18 (11)C9—C8—C13—C120.0 (2)
N1—C5—C6—N25.7 (2)C7—C8—C13—C12179.90 (14)
C4—C5—C6—N2−175.10 (14)
D—H···AD—HH···AD···AD—H···A
N3—H3′···O1W0.901 (18)1.914 (18)2.7917 (17)164.3 (16)
O1W—H1A···O1i0.84 (3)2.08 (3)2.9187 (19)172 (2)
O1W—H1A···N2i0.84 (3)2.48 (2)2.9494 (17)116.1 (19)
O1W—H1B···N1i0.89 (2)1.95 (3)2.8420 (18)178 (2)
C9—H9···O1W0.932.303.209 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3′⋯O1W 0.901 (18)1.914 (18)2.7917 (17)164.3 (16)
O1W—H1A⋯O1i 0.84 (3)2.08 (3)2.9187 (19)172 (2)
O1W—H1A⋯N2i 0.84 (3)2.48 (2)2.9494 (17)116.1 (19)
O1W—H1B⋯N1i 0.89 (2)1.95 (3)2.8420 (18)178 (2)
C9—H9⋯O1W 0.932.303.209 (2)165

Symmetry code: (i) .

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