| Literature DB >> 22969597 |
Yamuna Nair, M Sithambaresan, M R Prathapachandra Kurup.
Abstract
The title compound, C(13)H(10)FN(3)O·H(2)O, exists in the E conformation with respect to the azomethane C=N double bond. The mol-ecule is close to planar with a maximum deviation of 0.286 (2) Å. The pyridine ring is essentially coplanar with the central C(= O)N(2)C unit [dihedral angle = 2.02 (3)°] and the phenyl ring exhibits a dihedral angle of 14.41 (10)° with respect to the central unit. The crystal structure features O-H⋯N, N-H⋯O and O-H⋯O hydrogen-bond inter-actions between the solvent water and the benzohydrazide mol-ecules, as well as C-H⋯O hydrogen bonds and C-F⋯π [3.0833 (18) Å] inter-actions.Entities:
Year: 2012 PMID: 22969597 PMCID: PMC3435726 DOI: 10.1107/S1600536812035179
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10FN3O·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 9884 reflections |
| θ = 5.8–54.5° | |
| µ = 0.11 mm−1 | |
| Block, colorless | |
| 0.35 × 0.30 × 0.25 mm |
| Bruker Kappa APEXII CCD diffractometer | 2192 independent reflections |
| Radiation source: fine-focus sealed tube | 1817 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 25.0°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 34264 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2190 reflections | Δρmax = 0.18 e Å−3 |
| 185 parameters | Δρmin = −0.13 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0073 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.75071 (13) | 0.87133 (8) | 1.09485 (3) | 0.0629 (3) | |
| O1 | 0.82638 (15) | 1.12491 (9) | 0.86590 (4) | 0.0561 (3) | |
| O1W | 0.90084 (17) | 0.73757 (10) | 0.93534 (6) | 0.0600 (3) | |
| N1 | 0.60294 (15) | 1.12483 (10) | 1.03176 (5) | 0.0462 (3) | |
| N2 | 0.79363 (14) | 1.02906 (10) | 0.95707 (4) | 0.0413 (3) | |
| N3 | 0.88214 (15) | 0.97616 (11) | 0.91928 (4) | 0.0418 (3) | |
| C1 | 0.51707 (19) | 1.17020 (13) | 1.06961 (6) | 0.0514 (4) | |
| H1 | 0.4633 | 1.2397 | 1.0637 | 0.062* | |
| C2 | 0.5032 (2) | 1.12006 (14) | 1.11710 (6) | 0.0562 (4) | |
| H2 | 0.4420 | 1.1552 | 1.1425 | 0.067* | |
| C3 | 0.5812 (2) | 1.01773 (15) | 1.12616 (6) | 0.0557 (4) | |
| H3 | 0.5742 | 0.9811 | 1.1577 | 0.067* | |
| C4 | 0.66988 (18) | 0.97122 (13) | 1.08709 (5) | 0.0444 (4) | |
| C5 | 0.68155 (16) | 1.02434 (11) | 1.04024 (5) | 0.0392 (3) | |
| C6 | 0.77636 (17) | 0.97353 (12) | 0.99866 (5) | 0.0416 (3) | |
| H6 | 0.8237 | 0.9010 | 1.0026 | 0.050* | |
| C7 | 0.89290 (17) | 1.03168 (12) | 0.87370 (5) | 0.0416 (3) | |
| C8 | 0.99453 (17) | 0.97527 (13) | 0.83362 (5) | 0.0427 (3) | |
| C9 | 1.0457 (2) | 0.86099 (14) | 0.83555 (6) | 0.0543 (4) | |
| H9 | 1.0176 | 0.8148 | 0.8633 | 0.065* | |
| C10 | 1.1385 (2) | 0.81533 (17) | 0.79643 (6) | 0.0664 (5) | |
| H10 | 1.1715 | 0.7384 | 0.7978 | 0.080* | |
| C11 | 1.1819 (2) | 0.88324 (18) | 0.75569 (7) | 0.0692 (5) | |
| H11 | 1.2441 | 0.8522 | 0.7294 | 0.083* | |
| C12 | 1.1337 (2) | 0.99666 (18) | 0.75360 (6) | 0.0650 (5) | |
| H12 | 1.1645 | 1.0427 | 0.7261 | 0.078* | |
| C13 | 1.03959 (19) | 1.04278 (15) | 0.79213 (6) | 0.0529 (4) | |
| H13 | 1.0062 | 1.1196 | 0.7903 | 0.064* | |
| H3' | 0.908 (2) | 0.9010 (16) | 0.9235 (6) | 0.057 (5)* | |
| H1A | 0.838 (3) | 0.699 (2) | 0.9166 (9) | 0.102 (9)* | |
| H1B | 0.902 (3) | 0.701 (2) | 0.9653 (9) | 0.100 (8)* |
| F1 | 0.0738 (6) | 0.0639 (6) | 0.0511 (5) | 0.0185 (5) | 0.0040 (5) | 0.0128 (4) |
| O1 | 0.0757 (8) | 0.0461 (6) | 0.0467 (6) | 0.0037 (5) | 0.0021 (5) | 0.0061 (5) |
| O1W | 0.0761 (8) | 0.0452 (6) | 0.0589 (8) | −0.0080 (6) | 0.0070 (7) | 0.0081 (6) |
| N1 | 0.0496 (7) | 0.0422 (7) | 0.0468 (7) | 0.0015 (5) | 0.0020 (6) | −0.0028 (5) |
| N2 | 0.0454 (7) | 0.0418 (6) | 0.0366 (6) | −0.0004 (5) | 0.0024 (5) | −0.0031 (5) |
| N3 | 0.0500 (7) | 0.0406 (7) | 0.0348 (6) | 0.0017 (5) | 0.0046 (5) | −0.0004 (5) |
| C1 | 0.0508 (9) | 0.0451 (8) | 0.0583 (10) | 0.0016 (7) | 0.0051 (7) | −0.0096 (7) |
| C2 | 0.0529 (9) | 0.0628 (10) | 0.0528 (10) | −0.0014 (8) | 0.0107 (7) | −0.0155 (8) |
| C3 | 0.0571 (9) | 0.0704 (11) | 0.0395 (8) | −0.0017 (8) | 0.0053 (7) | −0.0008 (7) |
| C4 | 0.0447 (8) | 0.0492 (8) | 0.0395 (8) | 0.0006 (7) | −0.0027 (6) | −0.0008 (6) |
| C5 | 0.0381 (7) | 0.0417 (7) | 0.0377 (7) | −0.0032 (6) | −0.0013 (6) | −0.0039 (6) |
| C6 | 0.0459 (8) | 0.0401 (8) | 0.0388 (7) | 0.0034 (6) | −0.0001 (6) | −0.0008 (6) |
| C7 | 0.0458 (8) | 0.0415 (8) | 0.0375 (8) | −0.0089 (6) | −0.0036 (6) | −0.0003 (6) |
| C8 | 0.0421 (8) | 0.0527 (8) | 0.0333 (7) | −0.0109 (6) | −0.0020 (6) | −0.0007 (6) |
| C9 | 0.0643 (10) | 0.0551 (9) | 0.0433 (8) | −0.0037 (8) | 0.0112 (8) | −0.0003 (7) |
| C10 | 0.0736 (12) | 0.0708 (11) | 0.0550 (10) | 0.0039 (9) | 0.0161 (9) | −0.0077 (9) |
| C11 | 0.0611 (11) | 0.1001 (15) | 0.0463 (10) | −0.0034 (10) | 0.0143 (8) | −0.0098 (10) |
| C12 | 0.0576 (10) | 0.0987 (14) | 0.0386 (9) | −0.0147 (10) | 0.0058 (7) | 0.0105 (9) |
| C13 | 0.0519 (9) | 0.0651 (10) | 0.0418 (8) | −0.0110 (8) | −0.0024 (7) | 0.0068 (7) |
| F1—C4 | 1.3481 (17) | C4—C5 | 1.376 (2) |
| O1—C7 | 1.2258 (17) | C5—C6 | 1.4639 (19) |
| O1W—H1A | 0.84 (3) | C6—H6 | 0.9300 |
| O1W—H1B | 0.89 (2) | C7—C8 | 1.494 (2) |
| N1—C1 | 1.3266 (19) | C8—C9 | 1.387 (2) |
| N1—C5 | 1.3480 (18) | C8—C13 | 1.388 (2) |
| N2—C6 | 1.2721 (18) | C9—C10 | 1.384 (2) |
| N2—N3 | 1.3736 (16) | C9—H9 | 0.9300 |
| N3—C7 | 1.3582 (18) | C10—C11 | 1.372 (3) |
| N3—H3' | 0.901 (18) | C10—H10 | 0.9300 |
| C1—C2 | 1.377 (2) | C11—C12 | 1.370 (3) |
| C1—H1 | 0.9300 | C11—H11 | 0.9300 |
| C2—C3 | 1.366 (2) | C12—C13 | 1.381 (2) |
| C2—H2 | 0.9300 | C12—H12 | 0.9300 |
| C3—C4 | 1.368 (2) | C13—H13 | 0.9300 |
| C3—H3 | 0.9300 | ||
| H1A—O1W—H1B | 105 (2) | C5—C6—H6 | 120.2 |
| C1—N1—C5 | 118.31 (13) | O1—C7—N3 | 122.14 (13) |
| C6—N2—N3 | 116.90 (12) | O1—C7—C8 | 121.16 (13) |
| C7—N3—N2 | 117.28 (12) | N3—C7—C8 | 116.67 (13) |
| C7—N3—H3' | 123.2 (11) | C9—C8—C13 | 118.79 (14) |
| N2—N3—H3' | 117.8 (11) | C9—C8—C7 | 124.09 (13) |
| N1—C1—C2 | 123.60 (15) | C13—C8—C7 | 117.12 (14) |
| N1—C1—H1 | 118.2 | C10—C9—C8 | 120.27 (15) |
| C2—C1—H1 | 118.2 | C10—C9—H9 | 119.9 |
| C3—C2—C1 | 118.79 (14) | C8—C9—H9 | 119.9 |
| C3—C2—H2 | 120.6 | C11—C10—C9 | 120.18 (18) |
| C1—C2—H2 | 120.6 | C11—C10—H10 | 119.9 |
| C2—C3—C4 | 117.49 (15) | C9—C10—H10 | 119.9 |
| C2—C3—H3 | 121.3 | C12—C11—C10 | 120.13 (17) |
| C4—C3—H3 | 121.3 | C12—C11—H11 | 119.9 |
| F1—C4—C3 | 119.21 (13) | C10—C11—H11 | 119.9 |
| F1—C4—C5 | 118.78 (13) | C11—C12—C13 | 120.19 (16) |
| C3—C4—C5 | 122.00 (14) | C11—C12—H12 | 119.9 |
| N1—C5—C4 | 119.81 (13) | C13—C12—H12 | 119.9 |
| N1—C5—C6 | 118.68 (12) | C12—C13—C8 | 120.43 (16) |
| C4—C5—C6 | 121.51 (13) | C12—C13—H13 | 119.8 |
| N2—C6—C5 | 119.67 (12) | C8—C13—H13 | 119.8 |
| N2—C6—H6 | 120.2 | ||
| C6—N2—N3—C7 | 176.10 (12) | N2—N3—C7—O1 | −0.4 (2) |
| C5—N1—C1—C2 | −0.2 (2) | N2—N3—C7—C8 | 177.81 (11) |
| N1—C1—C2—C3 | −0.2 (2) | O1—C7—C8—C9 | −166.31 (14) |
| C1—C2—C3—C4 | 0.3 (2) | N3—C7—C8—C9 | 15.5 (2) |
| C2—C3—C4—F1 | 178.90 (14) | O1—C7—C8—C13 | 13.8 (2) |
| C2—C3—C4—C5 | 0.1 (2) | N3—C7—C8—C13 | −164.45 (13) |
| C1—N1—C5—C4 | 0.6 (2) | C13—C8—C9—C10 | −0.7 (2) |
| C1—N1—C5—C6 | 179.89 (13) | C7—C8—C9—C10 | 179.37 (15) |
| F1—C4—C5—N1 | −179.40 (12) | C8—C9—C10—C11 | 0.7 (3) |
| C3—C4—C5—N1 | −0.5 (2) | C9—C10—C11—C12 | 0.1 (3) |
| F1—C4—C5—C6 | 1.4 (2) | C10—C11—C12—C13 | −0.8 (3) |
| C3—C4—C5—C6 | −179.78 (14) | C11—C12—C13—C8 | 0.8 (3) |
| N3—N2—C6—C5 | −179.18 (11) | C9—C8—C13—C12 | 0.0 (2) |
| N1—C5—C6—N2 | 5.7 (2) | C7—C8—C13—C12 | 179.90 (14) |
| C4—C5—C6—N2 | −175.10 (14) |
| H··· | ||||
| N3—H3′···O1 | 0.901 (18) | 1.914 (18) | 2.7917 (17) | 164.3 (16) |
| O1 | 0.84 (3) | 2.08 (3) | 2.9187 (19) | 172 (2) |
| O1 | 0.84 (3) | 2.48 (2) | 2.9494 (17) | 116.1 (19) |
| O1 | 0.89 (2) | 1.95 (3) | 2.8420 (18) | 178 (2) |
| C9—H9···O1 | 0.93 | 2.30 | 3.209 (2) | 165 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H3′⋯O1 | 0.901 (18) | 1.914 (18) | 2.7917 (17) | 164.3 (16) |
| O1 | 0.84 (3) | 2.08 (3) | 2.9187 (19) | 172 (2) |
| O1 | 0.84 (3) | 2.48 (2) | 2.9494 (17) | 116.1 (19) |
| O1 | 0.89 (2) | 1.95 (3) | 2.8420 (18) | 178 (2) |
| C9—H9⋯O1 | 0.93 | 2.30 | 3.209 (2) | 165 |
Symmetry code: (i) .