| Literature DB >> 24860344 |
P B Sreeja1, M Sithambaresan2, N Aiswarya3, M R Prathapachandra Kurup3.
Abstract
The title compound, C14H12FN3O, adopts an E conformation with respect to the azomethine bond. The pyridyl and fluoro-benzene rings make dihedral angles of 38.58 (6) and 41.61 (5)° respectively with the central C(=O)N2CC unit, resulting in a non-planar mol-ecule. The inter-molecular inter-actions comprise two classical N-H⋯O and N-H⋯N hydrogen bonds and four non-classical C-H⋯O and C-H⋯F hydrogen bonds. These inter-actions are augmented by a weak π-π inter-action between the benzene and pyridyl rings of neighbouring mol-ecules, with a centroid-centroid distance of 3.9226 (10) Å. This leads to a three-dimensional supra-molecular assembly in the crystal system. The F atom is disordered over two sites in a 0.559 (3): 0.441 (3) ratio, through a 180° rotation of the fluoro-benzene ring.Entities:
Year: 2014 PMID: 24860344 PMCID: PMC4011257 DOI: 10.1107/S1600536814007545
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H12FN3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3938 reflections |
| θ = 2.5–28.2° | |
| µ = 0.10 mm−1 | |
| β = 99.244 (3)° | Block, colorless |
| 0.35 × 0.30 × 0.25 mm | |
| Bruker Kappa APEXII CCD diffractometer | 3137 independent reflections |
| Radiation source: fine-focus sealed tube | 2262 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 28.3°, θmin = 2.5° |
| ω and φ scan | |
| Absorption correction: multi-scan ( | |
| 9610 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3113 reflections | Δρmax = 0.24 e Å−3 |
| 179 parameters | Δρmin = −0.21 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.091 (9) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| F1 | 1.2954 (2) | 0.23496 (9) | 0.7843 (2) | 0.0687 (7) | 0.559 (3) |
| F1B | 1.1039 (4) | 0.01885 (12) | 0.6026 (3) | 0.0868 (11) | 0.441 (3) |
| O1 | 0.85862 (15) | 0.33623 (6) | 0.55332 (12) | 0.0580 (3) | |
| N1 | 1.02285 (13) | 0.21790 (6) | 0.53744 (12) | 0.0407 (3) | |
| N2 | 0.93699 (14) | 0.24882 (6) | 0.39513 (13) | 0.0412 (3) | |
| N3 | 0.5574 (2) | 0.40011 (8) | −0.01035 (19) | 0.0675 (4) | |
| C1 | 1.27207 (19) | 0.16966 (8) | 0.80753 (18) | 0.0496 (4) | |
| H1 | 1.2797 | 0.2175 | 0.7923 | 0.059* | 0.441 (3) |
| C2 | 1.3481 (2) | 0.14096 (11) | 0.9566 (2) | 0.0674 (5) | |
| H2 | 1.4056 | 0.1691 | 1.0399 | 0.081* | |
| C3 | 1.3382 (3) | 0.07038 (11) | 0.9809 (2) | 0.0726 (5) | |
| H3 | 1.3889 | 0.0505 | 1.0811 | 0.087* | |
| C4 | 1.2544 (3) | 0.02970 (10) | 0.8585 (3) | 0.0734 (5) | |
| H4 | 1.2473 | −0.0181 | 0.8746 | 0.088* | |
| C5 | 1.17979 (10) | 0.05957 (4) | 0.71021 (9) | 0.0592 (4) | |
| H5 | 1.1236 | 0.0310 | 0.6271 | 0.071* | 0.559 (3) |
| C6 | 1.18520 (10) | 0.13048 (4) | 0.68017 (9) | 0.0411 (3) | |
| C7 | 1.10140 (10) | 0.16188 (4) | 0.52091 (9) | 0.0399 (3) | |
| C8 | 1.11560 (10) | 0.12603 (4) | 0.35878 (9) | 0.0566 (4) | |
| H8A | 1.0211 | 0.0972 | 0.3257 | 0.085* | |
| H8B | 1.2126 | 0.0977 | 0.3735 | 0.085* | |
| H8C | 1.1222 | 0.1602 | 0.2732 | 0.085* | |
| C9 | 0.85653 (17) | 0.30834 (7) | 0.41681 (15) | 0.0409 (3) | |
| C10 | 0.75600 (16) | 0.33873 (7) | 0.26301 (16) | 0.0390 (3) | |
| C11 | 0.7454 (2) | 0.40996 (8) | 0.2466 (2) | 0.0546 (4) | |
| H11 | 0.8047 | 0.4389 | 0.3269 | 0.066* | |
| C12 | 0.6454 (2) | 0.43775 (9) | 0.1093 (2) | 0.0676 (5) | |
| H12 | 0.6392 | 0.4860 | 0.1000 | 0.081* | |
| C13 | 0.5681 (2) | 0.33184 (9) | 0.0080 (2) | 0.0604 (4) | |
| H13 | 0.5069 | 0.3043 | −0.0741 | 0.073* | |
| C14 | 0.66414 (18) | 0.29849 (8) | 0.14078 (18) | 0.0476 (3) | |
| H14 | 0.6667 | 0.2502 | 0.1475 | 0.057* | |
| H2' | 0.944 (2) | 0.2338 (8) | 0.2948 (14) | 0.053 (4)* |
| F1 | 0.0844 (14) | 0.0480 (10) | 0.0645 (11) | −0.0090 (8) | −0.0157 (9) | −0.0032 (8) |
| F1B | 0.129 (3) | 0.0477 (14) | 0.0729 (16) | −0.0225 (13) | −0.0185 (15) | 0.0026 (11) |
| O1 | 0.0791 (8) | 0.0563 (7) | 0.0350 (5) | 0.0115 (5) | −0.0015 (5) | −0.0073 (4) |
| N1 | 0.0442 (6) | 0.0490 (6) | 0.0280 (5) | 0.0044 (5) | 0.0026 (4) | 0.0053 (5) |
| N2 | 0.0477 (7) | 0.0498 (7) | 0.0248 (5) | 0.0072 (5) | 0.0021 (4) | 0.0029 (4) |
| N3 | 0.0639 (9) | 0.0691 (9) | 0.0618 (8) | 0.0087 (7) | −0.0132 (7) | 0.0126 (7) |
| C1 | 0.0514 (8) | 0.0522 (8) | 0.0421 (7) | 0.0001 (6) | −0.0015 (6) | 0.0027 (6) |
| C2 | 0.0646 (11) | 0.0874 (13) | 0.0435 (8) | −0.0005 (9) | −0.0116 (7) | 0.0025 (8) |
| C3 | 0.0748 (12) | 0.0848 (13) | 0.0540 (10) | 0.0174 (10) | −0.0023 (9) | 0.0261 (9) |
| C4 | 0.0912 (14) | 0.0584 (10) | 0.0680 (11) | 0.0085 (9) | 0.0046 (10) | 0.0226 (9) |
| C5 | 0.0708 (11) | 0.0504 (9) | 0.0540 (9) | −0.0012 (8) | 0.0025 (8) | 0.0085 (7) |
| C6 | 0.0409 (7) | 0.0462 (7) | 0.0356 (6) | 0.0027 (6) | 0.0043 (5) | 0.0051 (5) |
| C7 | 0.0413 (7) | 0.0444 (7) | 0.0328 (6) | −0.0021 (5) | 0.0021 (5) | 0.0031 (5) |
| C8 | 0.0755 (11) | 0.0520 (8) | 0.0381 (7) | 0.0112 (8) | −0.0038 (7) | −0.0036 (6) |
| C9 | 0.0458 (7) | 0.0446 (7) | 0.0307 (6) | −0.0009 (5) | 0.0017 (5) | 0.0009 (5) |
| C10 | 0.0393 (7) | 0.0440 (7) | 0.0334 (6) | 0.0040 (5) | 0.0050 (5) | 0.0009 (5) |
| C11 | 0.0611 (10) | 0.0434 (8) | 0.0539 (9) | −0.0009 (6) | −0.0071 (7) | 0.0002 (6) |
| C12 | 0.0733 (12) | 0.0476 (9) | 0.0741 (11) | 0.0041 (8) | −0.0117 (9) | 0.0125 (8) |
| C13 | 0.0566 (9) | 0.0658 (10) | 0.0514 (9) | 0.0039 (8) | −0.0139 (7) | −0.0045 (8) |
| C14 | 0.0492 (8) | 0.0455 (7) | 0.0452 (7) | 0.0031 (6) | −0.0013 (6) | −0.0030 (6) |
| F1—C1 | 1.288 (2) | C3—C4 | 1.358 (3) |
| F1B—C5 | 1.258 (2) | C4—C5 | 1.3782 (19) |
| O1—C9 | 1.2208 (16) | C5—C6 | 1.3856 |
| N1—C7 | 1.2748 (13) | C6—C7 | 1.4846 |
| N1—N2 | 1.3818 (15) | C7—C8 | 1.4977 |
| N2—C9 | 1.3483 (18) | C9—C10 | 1.4951 (18) |
| N3—C13 | 1.321 (2) | C10—C11 | 1.376 (2) |
| N3—C12 | 1.325 (2) | C10—C14 | 1.380 (2) |
| C1—C6 | 1.3777 (16) | C11—C12 | 1.378 (2) |
| C1—C2 | 1.378 (2) | C13—C14 | 1.383 (2) |
| C2—C3 | 1.374 (3) | ||
| C7—N1—N2 | 118.60 (9) | C5—C6—C7 | 121.8 |
| C9—N2—N1 | 117.10 (10) | N1—C7—C6 | 115.31 (5) |
| C13—N3—C12 | 116.19 (14) | N1—C7—C8 | 126.29 (5) |
| F1—C1—C6 | 119.78 (13) | C6—C7—C8 | 118.4 |
| F1—C1—C2 | 117.28 (16) | O1—C9—N2 | 123.57 (12) |
| C6—C1—C2 | 122.72 (15) | O1—C9—C10 | 120.04 (12) |
| C3—C2—C1 | 119.32 (17) | N2—C9—C10 | 116.35 (11) |
| C4—C3—C2 | 119.98 (16) | C11—C10—C14 | 118.00 (13) |
| C3—C4—C5 | 119.64 (16) | C11—C10—C9 | 119.08 (12) |
| F1B—C5—C4 | 116.26 (16) | C14—C10—C9 | 122.78 (12) |
| F1B—C5—C6 | 121.17 (12) | C10—C11—C12 | 118.87 (15) |
| C4—C5—C6 | 122.56 (10) | N3—C12—C11 | 124.12 (16) |
| C1—C6—C5 | 115.77 (7) | N3—C13—C14 | 124.51 (15) |
| C1—C6—C7 | 122.44 (7) | C10—C14—C13 | 118.29 (14) |
| C7—N1—N2—C9 | −179.39 (11) | C5—C6—C7—N1 | 136.27 (7) |
| F1—C1—C2—C3 | −174.5 (2) | C1—C6—C7—C8 | 136.79 (9) |
| C6—C1—C2—C3 | 0.1 (3) | C5—C6—C7—C8 | −43.6 |
| C1—C2—C3—C4 | 0.1 (3) | N1—N2—C9—O1 | 1.4 (2) |
| C2—C3—C4—C5 | 0.1 (3) | N1—N2—C9—C10 | −176.38 (11) |
| C3—C4—C5—F1B | −179.8 (2) | O1—C9—C10—C11 | 37.3 (2) |
| C3—C4—C5—C6 | −0.6 (2) | N2—C9—C10—C11 | −144.86 (14) |
| F1—C1—C6—C5 | 173.92 (14) | O1—C9—C10—C14 | −138.39 (15) |
| C2—C1—C6—C5 | −0.56 (18) | N2—C9—C10—C14 | 39.45 (18) |
| F1—C1—C6—C7 | −6.5 (2) | C14—C10—C11—C12 | −0.5 (2) |
| C2—C1—C6—C7 | 179.04 (12) | C9—C10—C11—C12 | −176.42 (15) |
| F1B—C5—C6—C1 | 180.0 (2) | C13—N3—C12—C11 | 0.6 (3) |
| C4—C5—C6—C1 | 0.80 (13) | C10—C11—C12—N3 | −0.1 (3) |
| F1B—C5—C6—C7 | 0.39 (19) | C12—N3—C13—C14 | −0.4 (3) |
| C4—C5—C6—C7 | −178.81 (11) | C11—C10—C14—C13 | 0.7 (2) |
| N2—N1—C7—C6 | −177.77 (8) | C9—C10—C14—C13 | 176.42 (13) |
| N2—N1—C7—C8 | 2.13 (14) | N3—C13—C14—C10 | −0.2 (3) |
| C1—C6—C7—N1 | −43.30 (10) |
| H··· | ||||
| N2—H2′···N1i | 0.87 (1) | 2.45 (1) | 3.1420 (15) | 137 (1) |
| N2—H2′···O1i | 0.87 (1) | 2.38 (1) | 3.1777 (15) | 154 (2) |
| C8—H8 | 0.96 | 2.46 | 3.1603 (19) | 129 |
| C8—H8 | 0.96 | 2.58 | 3.0680 (13) | 112 |
| C13—H13···F1ii | 0.93 | 2.34 | 3.238 (2) | 161 |
| C14—H14···O1i | 0.93 | 2.50 | 3.1849 (19) | 131 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2′⋯N1i | 0.87 (1) | 2.45 (1) | 3.1420 (15) | 137 (1) |
| N2—H2′⋯O1i | 0.87 (1) | 2.38 (1) | 3.1777 (15) | 154 (2) |
| C8—H8 | 0.96 | 2.46 | 3.1603 (19) | 129 |
| C8—H8 | 0.96 | 2.58 | 3.0680 (13) | 112 |
| C13—H13⋯F1ii | 0.93 | 2.34 | 3.238 (2) | 161 |
| C14—H14⋯O1i | 0.93 | 2.50 | 3.1849 (19) | 131 |
Symmetry codes: (i) ; (ii) .