Literature DB >> 24860344

N'-[(E)-1-(2-Fluoro-phen-yl)ethyl-idene]pyridine-4-carbohydrazide.

P B Sreeja1, M Sithambaresan2, N Aiswarya3, M R Prathapachandra Kurup3.   

Abstract

The title compound, C14H12FN3O, adopts an E conformation with respect to the azomethine bond. The pyridyl and fluoro-benzene rings make dihedral angles of 38.58 (6) and 41.61 (5)° respectively with the central C(=O)N2CC unit, resulting in a non-planar mol-ecule. The inter-molecular inter-actions comprise two classical N-H⋯O and N-H⋯N hydrogen bonds and four non-classical C-H⋯O and C-H⋯F hydrogen bonds. These inter-actions are augmented by a weak π-π inter-action between the benzene and pyridyl rings of neighbouring mol-ecules, with a centroid-centroid distance of 3.9226 (10) Å. This leads to a three-dimensional supra-molecular assembly in the crystal system. The F atom is disordered over two sites in a 0.559 (3): 0.441 (3) ratio, through a 180° rotation of the fluoro-benzene ring.

Entities:  

Year:  2014        PMID: 24860344      PMCID: PMC4011257          DOI: 10.1107/S1600536814007545

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological properties of hydrazones, see: Kahwa et al. (1986 ▶); Santos et al. (2001 ▶); Rollas & Kucukguzel (2007 ▶). For the synthesis of related compounds, see: Mangalam & Kurup (2011 ▶). For related structures, see: Sreeja et al. (2013 ▶, 2014 ▶).

Experimental

Crystal data

C14H12FN3O M = 257.27 Monoclinic, a = 8.2649 (6) Å b = 19.2127 (14) Å c = 8.0554 (5) Å β = 99.244 (3)° V = 1262.51 (15) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.965, T max = 0.976 9610 measured reflections 3137 independent reflections 2262 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.152 S = 1.04 3113 reflections 179 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) Global, I. DOI: 10.1107/S1600536814007545/fj2669sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007545/fj2669Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814007545/fj2669Isup3.cml CCDC reference: 995414 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H12FN3OF(000) = 536
Mr = 257.27Dx = 1.354 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3938 reflections
a = 8.2649 (6) Åθ = 2.5–28.2°
b = 19.2127 (14) ŵ = 0.10 mm1
c = 8.0554 (5) ÅT = 296 K
β = 99.244 (3)°Block, colorless
V = 1262.51 (15) Å30.35 × 0.30 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3137 independent reflections
Radiation source: fine-focus sealed tube2262 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 8.33 pixels mm-1θmax = 28.3°, θmin = 2.5°
ω and φ scanh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −25→25
Tmin = 0.965, Tmax = 0.976l = −6→10
9610 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.152w = 1/[σ2(Fo2) + (0.0851P)2 + 0.152P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3113 reflectionsΔρmax = 0.24 e Å3
179 parametersΔρmin = −0.21 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.091 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F11.2954 (2)0.23496 (9)0.7843 (2)0.0687 (7)0.559 (3)
F1B1.1039 (4)0.01885 (12)0.6026 (3)0.0868 (11)0.441 (3)
O10.85862 (15)0.33623 (6)0.55332 (12)0.0580 (3)
N11.02285 (13)0.21790 (6)0.53744 (12)0.0407 (3)
N20.93699 (14)0.24882 (6)0.39513 (13)0.0412 (3)
N30.5574 (2)0.40011 (8)−0.01035 (19)0.0675 (4)
C11.27207 (19)0.16966 (8)0.80753 (18)0.0496 (4)
H11.27970.21750.79230.059*0.441 (3)
C21.3481 (2)0.14096 (11)0.9566 (2)0.0674 (5)
H21.40560.16911.03990.081*
C31.3382 (3)0.07038 (11)0.9809 (2)0.0726 (5)
H31.38890.05051.08110.087*
C41.2544 (3)0.02970 (10)0.8585 (3)0.0734 (5)
H41.2473−0.01810.87460.088*
C51.17979 (10)0.05957 (4)0.71021 (9)0.0592 (4)
H51.12360.03100.62710.071*0.559 (3)
C61.18520 (10)0.13048 (4)0.68017 (9)0.0411 (3)
C71.10140 (10)0.16188 (4)0.52091 (9)0.0399 (3)
C81.11560 (10)0.12603 (4)0.35878 (9)0.0566 (4)
H8A1.02110.09720.32570.085*
H8B1.21260.09770.37350.085*
H8C1.12220.16020.27320.085*
C90.85653 (17)0.30834 (7)0.41681 (15)0.0409 (3)
C100.75600 (16)0.33873 (7)0.26301 (16)0.0390 (3)
C110.7454 (2)0.40996 (8)0.2466 (2)0.0546 (4)
H110.80470.43890.32690.066*
C120.6454 (2)0.43775 (9)0.1093 (2)0.0676 (5)
H120.63920.48600.10000.081*
C130.5681 (2)0.33184 (9)0.0080 (2)0.0604 (4)
H130.50690.3043−0.07410.073*
C140.66414 (18)0.29849 (8)0.14078 (18)0.0476 (3)
H140.66670.25020.14750.057*
H2'0.944 (2)0.2338 (8)0.2948 (14)0.053 (4)*
U11U22U33U12U13U23
F10.0844 (14)0.0480 (10)0.0645 (11)−0.0090 (8)−0.0157 (9)−0.0032 (8)
F1B0.129 (3)0.0477 (14)0.0729 (16)−0.0225 (13)−0.0185 (15)0.0026 (11)
O10.0791 (8)0.0563 (7)0.0350 (5)0.0115 (5)−0.0015 (5)−0.0073 (4)
N10.0442 (6)0.0490 (6)0.0280 (5)0.0044 (5)0.0026 (4)0.0053 (5)
N20.0477 (7)0.0498 (7)0.0248 (5)0.0072 (5)0.0021 (4)0.0029 (4)
N30.0639 (9)0.0691 (9)0.0618 (8)0.0087 (7)−0.0132 (7)0.0126 (7)
C10.0514 (8)0.0522 (8)0.0421 (7)0.0001 (6)−0.0015 (6)0.0027 (6)
C20.0646 (11)0.0874 (13)0.0435 (8)−0.0005 (9)−0.0116 (7)0.0025 (8)
C30.0748 (12)0.0848 (13)0.0540 (10)0.0174 (10)−0.0023 (9)0.0261 (9)
C40.0912 (14)0.0584 (10)0.0680 (11)0.0085 (9)0.0046 (10)0.0226 (9)
C50.0708 (11)0.0504 (9)0.0540 (9)−0.0012 (8)0.0025 (8)0.0085 (7)
C60.0409 (7)0.0462 (7)0.0356 (6)0.0027 (6)0.0043 (5)0.0051 (5)
C70.0413 (7)0.0444 (7)0.0328 (6)−0.0021 (5)0.0021 (5)0.0031 (5)
C80.0755 (11)0.0520 (8)0.0381 (7)0.0112 (8)−0.0038 (7)−0.0036 (6)
C90.0458 (7)0.0446 (7)0.0307 (6)−0.0009 (5)0.0017 (5)0.0009 (5)
C100.0393 (7)0.0440 (7)0.0334 (6)0.0040 (5)0.0050 (5)0.0009 (5)
C110.0611 (10)0.0434 (8)0.0539 (9)−0.0009 (6)−0.0071 (7)0.0002 (6)
C120.0733 (12)0.0476 (9)0.0741 (11)0.0041 (8)−0.0117 (9)0.0125 (8)
C130.0566 (9)0.0658 (10)0.0514 (9)0.0039 (8)−0.0139 (7)−0.0045 (8)
C140.0492 (8)0.0455 (7)0.0452 (7)0.0031 (6)−0.0013 (6)−0.0030 (6)
F1—C11.288 (2)C3—C41.358 (3)
F1B—C51.258 (2)C4—C51.3782 (19)
O1—C91.2208 (16)C5—C61.3856
N1—C71.2748 (13)C6—C71.4846
N1—N21.3818 (15)C7—C81.4977
N2—C91.3483 (18)C9—C101.4951 (18)
N3—C131.321 (2)C10—C111.376 (2)
N3—C121.325 (2)C10—C141.380 (2)
C1—C61.3777 (16)C11—C121.378 (2)
C1—C21.378 (2)C13—C141.383 (2)
C2—C31.374 (3)
C7—N1—N2118.60 (9)C5—C6—C7121.8
C9—N2—N1117.10 (10)N1—C7—C6115.31 (5)
C13—N3—C12116.19 (14)N1—C7—C8126.29 (5)
F1—C1—C6119.78 (13)C6—C7—C8118.4
F1—C1—C2117.28 (16)O1—C9—N2123.57 (12)
C6—C1—C2122.72 (15)O1—C9—C10120.04 (12)
C3—C2—C1119.32 (17)N2—C9—C10116.35 (11)
C4—C3—C2119.98 (16)C11—C10—C14118.00 (13)
C3—C4—C5119.64 (16)C11—C10—C9119.08 (12)
F1B—C5—C4116.26 (16)C14—C10—C9122.78 (12)
F1B—C5—C6121.17 (12)C10—C11—C12118.87 (15)
C4—C5—C6122.56 (10)N3—C12—C11124.12 (16)
C1—C6—C5115.77 (7)N3—C13—C14124.51 (15)
C1—C6—C7122.44 (7)C10—C14—C13118.29 (14)
C7—N1—N2—C9−179.39 (11)C5—C6—C7—N1136.27 (7)
F1—C1—C2—C3−174.5 (2)C1—C6—C7—C8136.79 (9)
C6—C1—C2—C30.1 (3)C5—C6—C7—C8−43.6
C1—C2—C3—C40.1 (3)N1—N2—C9—O11.4 (2)
C2—C3—C4—C50.1 (3)N1—N2—C9—C10−176.38 (11)
C3—C4—C5—F1B−179.8 (2)O1—C9—C10—C1137.3 (2)
C3—C4—C5—C6−0.6 (2)N2—C9—C10—C11−144.86 (14)
F1—C1—C6—C5173.92 (14)O1—C9—C10—C14−138.39 (15)
C2—C1—C6—C5−0.56 (18)N2—C9—C10—C1439.45 (18)
F1—C1—C6—C7−6.5 (2)C14—C10—C11—C12−0.5 (2)
C2—C1—C6—C7179.04 (12)C9—C10—C11—C12−176.42 (15)
F1B—C5—C6—C1180.0 (2)C13—N3—C12—C110.6 (3)
C4—C5—C6—C10.80 (13)C10—C11—C12—N3−0.1 (3)
F1B—C5—C6—C70.39 (19)C12—N3—C13—C14−0.4 (3)
C4—C5—C6—C7−178.81 (11)C11—C10—C14—C130.7 (2)
N2—N1—C7—C6−177.77 (8)C9—C10—C14—C13176.42 (13)
N2—N1—C7—C82.13 (14)N3—C13—C14—C10−0.2 (3)
C1—C6—C7—N1−43.30 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2′···N1i0.87 (1)2.45 (1)3.1420 (15)137 (1)
N2—H2′···O1i0.87 (1)2.38 (1)3.1777 (15)154 (2)
C8—H8C···F1i0.962.463.1603 (19)129
C8—H8C···O1i0.962.583.0680 (13)112
C13—H13···F1ii0.932.343.238 (2)161
C14—H14···O1i0.932.503.1849 (19)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2′⋯N1i 0.87 (1)2.45 (1)3.1420 (15)137 (1)
N2—H2′⋯O1i 0.87 (1)2.38 (1)3.1777 (15)154 (2)
C8—H8C⋯F1i 0.962.463.1603 (19)129
C8—H8C⋯O1i 0.962.583.0680 (13)112
C13—H13⋯F1ii 0.932.343.238 (2)161
C14—H14⋯O1i 0.932.503.1849 (19)131

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Versatile binding properties of a di-2-pyridyl ketone nicotinoylhydrazone ligand: crystal structure of a Cu(II) complex.

Authors:  Neema Ani Mangalam; M R Prathapachandra Kurup
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2010-12-07       Impact factor: 4.098

Review 3.  Biological activities of hydrazone derivatives.

Authors:  Sevim Rollas; S Güniz Küçükgüzel
Journal:  Molecules       Date:  2007-08-17       Impact factor: 4.411

4.  N'-[(1E)-1-(2-Fluoro-phen-yl)ethyl-idene]pyridine-3-carbohydrazide.

Authors:  P B Sreeja; M Sithambaresan; N Aiswarya; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-08

5.  N'-[(E)-2-Fluoro-benzyl-idene]benzo-hydrazide.

Authors:  P B Sreeja; M Sithambaresan; N Aiswarya; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-27
  5 in total

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