Literature DB >> 24764838

1-[6-(1H-Indol-1-yl)pyridin-2-yl]-1H-indole-3-carbaldehyde.

C Ramathilagam1, P R Umarani2, N Venkatesan3, P Rajakumar3, B Gunasekaran4, V Manivannan5.   

Abstract

In the title compound, C22H15N3O, the dihedral angle between the two indole units is 33.72 (3)°. The mol-ecular structure features a weak intra-molecular C-H⋯N inter-action. In the crystal, weak C-H⋯O and C-H⋯π inter-actions, forming a two-dimensional network parallel to the bc plane.

Entities:  

Year:  2014        PMID: 24764838      PMCID: PMC3998277          DOI: 10.1107/S1600536813034375

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Macor et al. (1992 ▶); Andreani et al. (2001 ▶); Quetin-Leclercq (1994 ▶); Mukhopadhyay et al. (1981 ▶); Singh et al. (2000 ▶). For related structures see: Dileep et al. (2012 ▶); Wu et al. (2012 ▶)

Experimental

Crystal data

C22H15N3O M = 337.37 Orthorhombic, a = 18.2208 (7) Å b = 15.7672 (9) Å c = 11.7034 (7) Å V = 3362.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.980, T max = 0.987 11189 measured reflections 3521 independent reflections 2072 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.118 S = 1.00 3521 reflections 235 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813034375/hg5369sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813034375/hg5369Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813034375/hg5369Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H15N3OF(000) = 1408
Mr = 337.37Dx = 1.333 Mg m3
Orthorhombic, PnnaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2a 2bcCell parameters from 3755 reflections
a = 18.2208 (7) Åθ = 2.0–26.6°
b = 15.7672 (9) ŵ = 0.08 mm1
c = 11.7034 (7) ÅT = 295 K
V = 3362.3 (3) Å3Block, colourless
Z = 80.25 × 0.20 × 0.15 mm
Bruker APEXII CCD diffractometer3521 independent reflections
Radiation source: fine-focus sealed tube2072 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
Detector resolution: 0 pixels mm-1θmax = 26.7°, θmin = 2.1°
ω and φ scansh = −14→22
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −19→13
Tmin = 0.980, Tmax = 0.987l = −14→10
11189 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0507P)2 + 0.3404P] where P = (Fo2 + 2Fc2)/3
3521 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.16 e Å3
xyzUiso*/Ueq
C10.19452 (8)0.09535 (11)0.38032 (14)0.0407 (4)
C20.23265 (9)0.15297 (11)0.44461 (16)0.0493 (5)
H20.25990.19610.41090.059*
C30.22882 (10)0.14407 (12)0.56135 (16)0.0541 (5)
H30.25450.18120.60830.065*
C40.18729 (10)0.08067 (12)0.60890 (15)0.0506 (5)
H40.18400.07450.68770.061*
C50.15023 (8)0.02580 (10)0.53543 (14)0.0408 (4)
C60.10521 (10)−0.06632 (14)0.69106 (16)0.0595 (5)
H60.1322−0.04130.74950.071*
C70.05930 (11)−0.13186 (14)0.70475 (18)0.0658 (6)
H70.0495−0.15990.77300.079*
C80.02821 (9)−0.15088 (12)0.59656 (16)0.0510 (5)
C9−0.02337 (10)−0.21026 (13)0.55946 (19)0.0619 (6)
H9−0.0439−0.24840.61090.074*
C10−0.04334 (10)−0.21191 (13)0.4474 (2)0.0639 (6)
H10−0.0771−0.25200.42220.077*
C11−0.01383 (10)−0.15451 (13)0.37027 (18)0.0598 (5)
H11−0.0286−0.15650.29430.072*
C120.03711 (9)−0.09435 (12)0.40377 (16)0.0500 (5)
H120.0564−0.05570.35180.060*
C130.05850 (9)−0.09360 (10)0.51763 (15)0.0417 (4)
C140.13419 (11)0.07765 (11)0.19300 (16)0.0528 (5)
H140.08910.06040.22200.063*
C150.15005 (12)0.08533 (11)0.07958 (16)0.0579 (5)
C160.22504 (11)0.11196 (11)0.07240 (16)0.0530 (5)
C170.27264 (15)0.12907 (13)−0.01922 (19)0.0745 (7)
H170.25660.1241−0.09430.089*
C180.34277 (16)0.15310 (15)0.0044 (2)0.0852 (8)
H180.37450.1651−0.05570.102*
C190.36810 (13)0.16008 (14)0.1154 (2)0.0807 (7)
H190.41640.17650.12830.097*
C200.32270 (11)0.14309 (12)0.20799 (19)0.0610 (5)
H200.33960.14700.28280.073*
C210.25168 (10)0.12027 (10)0.18389 (15)0.0489 (5)
C220.09838 (16)0.06891 (14)−0.0091 (2)0.0804 (7)
H220.05180.05130.01290.096*
N10.15424 (7)0.03227 (8)0.42256 (11)0.0408 (4)
N20.10689 (7)−0.04099 (9)0.57769 (11)0.0438 (4)
N30.19390 (8)0.09876 (9)0.25834 (12)0.0464 (4)
O10.10984 (12)0.07594 (11)−0.11088 (14)0.1121 (7)
U11U22U33U12U13U23
C10.0422 (9)0.0379 (10)0.0420 (10)0.0049 (8)0.0027 (8)0.0014 (8)
C20.0513 (11)0.0412 (10)0.0555 (12)−0.0061 (9)0.0021 (9)−0.0001 (9)
C30.0583 (12)0.0485 (11)0.0555 (12)−0.0063 (10)−0.0070 (9)−0.0080 (10)
C40.0599 (11)0.0518 (12)0.0402 (11)−0.0027 (10)−0.0033 (9)−0.0020 (9)
C50.0404 (9)0.0405 (10)0.0415 (10)0.0049 (8)0.0026 (8)0.0004 (8)
C60.0656 (12)0.0715 (14)0.0415 (11)−0.0075 (11)0.0011 (9)0.0080 (10)
C70.0693 (13)0.0733 (15)0.0548 (13)−0.0130 (12)0.0074 (10)0.0201 (11)
C80.0455 (10)0.0474 (11)0.0600 (12)0.0034 (9)0.0045 (9)0.0108 (10)
C90.0523 (12)0.0494 (13)0.0841 (16)−0.0028 (10)0.0022 (11)0.0159 (11)
C100.0525 (12)0.0461 (13)0.0930 (18)−0.0048 (10)−0.0075 (12)0.0009 (12)
C110.0575 (12)0.0569 (13)0.0650 (13)−0.0005 (11)−0.0078 (10)−0.0025 (11)
C120.0501 (10)0.0461 (11)0.0537 (12)−0.0003 (9)0.0010 (9)0.0014 (9)
C130.0378 (9)0.0380 (10)0.0493 (11)0.0060 (8)0.0033 (8)0.0006 (9)
C140.0634 (12)0.0436 (11)0.0515 (12)−0.0067 (10)−0.0049 (10)0.0035 (9)
C150.0851 (15)0.0409 (11)0.0476 (12)−0.0030 (11)−0.0051 (11)0.0012 (9)
C160.0813 (14)0.0307 (10)0.0469 (12)0.0023 (10)0.0109 (10)0.0005 (9)
C170.117 (2)0.0508 (13)0.0559 (14)0.0038 (14)0.0237 (14)−0.0006 (10)
C180.100 (2)0.0672 (16)0.088 (2)−0.0025 (15)0.0469 (16)0.0001 (14)
C190.0740 (15)0.0641 (15)0.104 (2)−0.0029 (12)0.0309 (15)−0.0014 (14)
C200.0591 (12)0.0508 (12)0.0729 (14)0.0022 (10)0.0118 (11)0.0007 (10)
C210.0614 (12)0.0323 (10)0.0530 (12)−0.0003 (9)0.0097 (10)0.0017 (9)
C220.125 (2)0.0581 (14)0.0584 (15)−0.0025 (14)−0.0222 (14)−0.0043 (12)
N10.0427 (8)0.0375 (8)0.0422 (9)0.0005 (7)0.0031 (6)0.0023 (7)
N20.0475 (8)0.0438 (9)0.0400 (9)−0.0009 (7)0.0039 (7)0.0025 (7)
N30.0538 (9)0.0405 (9)0.0448 (9)−0.0051 (7)0.0049 (7)0.0043 (7)
O10.189 (2)0.0900 (13)0.0577 (12)0.0140 (13)−0.0299 (12)−0.0115 (9)
C1—N11.331 (2)C11—H110.9300
C1—C21.369 (2)C12—C131.388 (2)
C1—N31.429 (2)C12—H120.9300
C2—C31.375 (2)C13—N21.400 (2)
C2—H20.9300C14—C151.364 (2)
C3—C41.372 (2)C14—N31.371 (2)
C3—H30.9300C14—H140.9300
C4—C51.394 (2)C15—C221.425 (3)
C4—H40.9300C15—C161.432 (3)
C5—N11.3269 (19)C16—C211.398 (2)
C5—N21.406 (2)C16—C171.405 (3)
C6—C71.339 (3)C17—C181.361 (3)
C6—N21.386 (2)C17—H170.9300
C6—H60.9300C18—C191.383 (3)
C7—C81.419 (3)C18—H180.9300
C7—H70.9300C19—C201.390 (3)
C8—C91.396 (3)C19—H190.9300
C8—C131.405 (2)C20—C211.372 (3)
C9—C101.362 (3)C20—H200.9300
C9—H90.9300C21—N31.408 (2)
C10—C111.386 (3)C22—O11.215 (3)
C10—H100.9300C22—H220.9300
C11—C121.384 (3)
N1—C1—C2124.85 (16)C12—C13—C8121.02 (17)
N1—C1—N3113.26 (15)N2—C13—C8107.35 (16)
C2—C1—N3121.88 (16)C15—C14—N3110.69 (17)
C1—C2—C3116.90 (17)C15—C14—H14124.7
C1—C2—H2121.5N3—C14—H14124.7
C3—C2—H2121.5C14—C15—C22123.6 (2)
C4—C3—C2120.36 (17)C14—C15—C16106.58 (17)
C4—C3—H3119.8C22—C15—C16129.9 (2)
C2—C3—H3119.8C21—C16—C17118.7 (2)
C3—C4—C5117.99 (17)C21—C16—C15107.70 (16)
C3—C4—H4121.0C17—C16—C15133.6 (2)
C5—C4—H4121.0C18—C17—C16118.6 (2)
N1—C5—C4122.65 (16)C18—C17—H17120.7
N1—C5—N2116.02 (15)C16—C17—H17120.7
C4—C5—N2121.32 (16)C17—C18—C19121.7 (2)
C7—C6—N2110.53 (17)C17—C18—H18119.1
C7—C6—H6124.7C19—C18—H18119.1
N2—C6—H6124.7C18—C19—C20121.2 (2)
C6—C7—C8107.79 (17)C18—C19—H19119.4
C6—C7—H7126.1C20—C19—H19119.4
C8—C7—H7126.1C21—C20—C19116.9 (2)
C9—C8—C13119.42 (18)C21—C20—H20121.6
C9—C8—C7133.48 (18)C19—C20—H20121.6
C13—C8—C7107.10 (17)C20—C21—C16122.93 (17)
C10—C9—C8119.50 (19)C20—C21—N3129.86 (18)
C10—C9—H9120.2C16—C21—N3107.17 (16)
C8—C9—H9120.2O1—C22—C15125.7 (3)
C9—C10—C11120.73 (19)O1—C22—H22117.1
C9—C10—H10119.6C15—C22—H22117.1
C11—C10—H10119.6C5—N1—C1117.23 (14)
C12—C11—C10121.54 (19)C6—N2—C13107.22 (14)
C12—C11—H11119.2C6—N2—C5124.40 (15)
C10—C11—H11119.2C13—N2—C5128.38 (14)
C11—C12—C13117.77 (17)C14—N3—C21107.86 (15)
C11—C12—H12121.1C14—N3—C1123.68 (14)
C13—C12—H12121.1C21—N3—C1128.43 (15)
C12—C13—N2131.59 (16)
N1—C1—C2—C30.3 (3)C19—C20—C21—N3179.32 (18)
N3—C1—C2—C3179.43 (15)C17—C16—C21—C20−1.1 (3)
C1—C2—C3—C4−1.1 (3)C15—C16—C21—C20178.44 (17)
C2—C3—C4—C50.6 (3)C17—C16—C21—N3−179.34 (16)
C3—C4—C5—N10.6 (2)C15—C16—C21—N30.19 (19)
C3—C4—C5—N2179.67 (16)C14—C15—C22—O1179.0 (2)
N2—C6—C7—C8−0.6 (2)C16—C15—C22—O1−0.8 (4)
C6—C7—C8—C9−178.4 (2)C4—C5—N1—C1−1.4 (2)
C6—C7—C8—C130.5 (2)N2—C5—N1—C1179.54 (13)
C13—C8—C9—C100.2 (3)C2—C1—N1—C50.9 (2)
C7—C8—C9—C10178.9 (2)N3—C1—N1—C5−178.30 (13)
C8—C9—C10—C11−1.0 (3)C7—C6—N2—C130.6 (2)
C9—C10—C11—C120.6 (3)C7—C6—N2—C5−179.48 (16)
C10—C11—C12—C130.6 (3)C12—C13—N2—C6177.36 (18)
C11—C12—C13—N2−178.68 (16)C8—C13—N2—C6−0.26 (18)
C11—C12—C13—C8−1.3 (3)C12—C13—N2—C5−2.6 (3)
C9—C8—C13—C121.0 (3)C8—C13—N2—C5179.79 (15)
C7—C8—C13—C12−178.03 (16)N1—C5—N2—C6169.29 (16)
C9—C8—C13—N2178.90 (15)C4—C5—N2—C6−9.8 (2)
C7—C8—C13—N2−0.11 (19)N1—C5—N2—C13−10.8 (2)
N3—C14—C15—C22−179.03 (18)C4—C5—N2—C13170.11 (16)
N3—C14—C15—C160.8 (2)C15—C14—N3—C21−0.7 (2)
C14—C15—C16—C21−0.6 (2)C15—C14—N3—C1−178.77 (16)
C22—C15—C16—C21179.2 (2)C20—C21—N3—C14−177.78 (18)
C14—C15—C16—C17178.8 (2)C16—C21—N3—C140.30 (19)
C22—C15—C16—C17−1.4 (4)C20—C21—N3—C10.2 (3)
C21—C16—C17—C180.0 (3)C16—C21—N3—C1178.24 (16)
C15—C16—C17—C18−179.4 (2)N1—C1—N3—C1434.4 (2)
C16—C17—C18—C190.7 (3)C2—C1—N3—C14−144.83 (17)
C17—C18—C19—C20−0.3 (4)N1—C1—N3—C21−143.23 (16)
C18—C19—C20—C21−0.8 (3)C2—C1—N3—C2137.5 (3)
C19—C20—C21—C161.5 (3)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1i0.932.503.227 (3)135
C12—H12···N10.932.412.931 (2)116
C2—H2···Cg5ii0.932.733.554 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg5 is the centroid of the C16–C21 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯O1i 0.932.503.227 (3)135
C12—H12⋯N10.932.412.931 (2)116
C2—H2⋯Cg5ii 0.932.733.554 (2)148

Symmetry codes: (i) ; (ii) .

  9 in total

1.  Antifungal activity of venenatine, an indole alkaloid isolated from Alstonia venenata.

Authors:  U P Singh; B K Sarma; P K Mishra; A B Ray
Journal:  Folia Microbiol (Praha)       Date:  2000       Impact factor: 2.099

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  [Potential anticancer and antiparasitic indole alkaloids].

Authors:  J Quetin-Leclercq
Journal:  J Pharm Belg       Date:  1994 May-Jun

4.  Synthesis and antitumor activity of substituted 3-(5-imidazo[2,1-b]thiazolylmethylene)-2-indolinones.

Authors:  A Andreani; M Granaiola; A Leoni; A Locatelli; R Morigi; M Rambaldi; G Giorgi; L Salvini; V Garaliene
Journal:  Anticancer Drug Des       Date:  2001 Apr-Jun

5.  Anticancer indole alkaloids of Rhazya stricta.

Authors:  S Mukhopadhyay; G A Handy; S Funayama; G A Cordell
Journal:  J Nat Prod       Date:  1981 Nov-Dec       Impact factor: 4.050

6.  1-(2-Aminoethyl)-3-methyl-8,9-dihydropyrano[3,2-e]indole: a rotationally restricted phenolic analog of the neurotransmitter serotonin and agonist selective for serotonin (5-HT2-type) receptors.

Authors:  J E Macor; C B Fox; C Johnson; B K Koe; L A Lebel; S H Zorn
Journal:  J Med Chem       Date:  1992-10-02       Impact factor: 7.446

7.  1-(2-Methyl-benz-yl)-1H-indole-3-carbaldehyde.

Authors:  Yang Wu; Wen Ren; Qiang Wang; Gu He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-24

8.  1H-Indole-3-carbaldehyde.

Authors:  C S Dileep; M M M Abdoh; M P Chakravarthy; K N Mohana; M A Sridhar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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