Literature DB >> 23284457

1H-Indole-3-carbaldehyde.

C S Dileep1, M M M Abdoh, M P Chakravarthy, K N Mohana, M A Sridhar.   

Abstract

In the title compound, C(9)H(7)NO, the benzene ring forms a dihedral angle of 3.98 (12)° with the pyrrole ring. In the crystal, N-H⋯O hydrogen bonds links the mol-ecules into chains which run parallel to [02-1].

Entities:  

Year:  2012        PMID: 23284457      PMCID: PMC3515237          DOI: 10.1107/S1600536812040573

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Rizal et al. (2008 ▶).

Experimental

Crystal data

C9H7NO M = 145.16 Orthorhombic, a = 14.0758 (9) Å b = 5.8059 (4) Å c = 8.6909 (5) Å V = 710.24 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 3791 measured reflections 775 independent reflections 699 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.069 S = 1.08 775 reflections 109 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.09 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009) ▶; software used to prepare material for publication: PLATON ▶. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040573/go2070sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040573/go2070Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812040573/go2070Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H7NOZ = 4
Mr = 145.16F(000) = 304
Orthorhombic, Pca21Dx = 1.357 Mg m3
Hall symbol: P 2c -2acMo Kα radiation, λ = 0.71073 Å
a = 14.0758 (9) ŵ = 0.09 mm1
b = 5.8059 (4) ÅT = 293 K
c = 8.6909 (5) ÅBlock, colourless
V = 710.24 (8) Å30.30 × 0.20 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer699 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.024
Graphite monochromatorθmax = 26.5°, θmin = 2.9°
ω and φ scanh = −17→16
3791 measured reflectionsk = −6→7
775 independent reflectionsl = −10→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0297P)2 + 0.0895P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.002
775 reflectionsΔρmax = 0.11 e Å3
109 parametersΔρmin = −0.09 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.031 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.76788 (16)0.4092 (3)−0.0642 (3)0.0443 (5)
C20.72368 (14)0.2453 (4)0.0341 (3)0.0401 (5)
C30.76781 (17)0.0501 (4)0.0871 (3)0.0489 (6)
H30.82970.00740.06280.059*
C40.62446 (14)0.0451 (3)0.1907 (3)0.0418 (5)
C50.54556 (17)−0.0080 (4)0.2797 (3)0.0500 (6)
H50.5427−0.14300.33710.060*
C60.47250 (16)0.1462 (4)0.2795 (3)0.0535 (6)
H60.41890.11660.33880.064*
C70.47646 (15)0.3467 (4)0.1924 (3)0.0526 (6)
H70.42550.44870.19510.063*
C80.55405 (16)0.3976 (4)0.1024 (3)0.0449 (5)
H80.55550.53100.04330.054*
C90.63026 (14)0.2450 (3)0.1019 (2)0.0370 (5)
N10.70988 (14)−0.0700 (3)0.1783 (2)0.0510 (5)
O10.72964 (12)0.5795 (2)−0.1176 (2)0.0565 (5)
H10.8360 (16)0.376 (4)−0.086 (3)0.054 (6)*
H1A0.7253 (17)−0.204 (4)0.233 (4)0.073 (8)*
U11U22U33U12U13U23
C10.0516 (13)0.0432 (10)0.0382 (12)−0.0002 (9)0.0027 (11)−0.0014 (10)
C20.0514 (11)0.0368 (9)0.0323 (10)0.0032 (9)0.0004 (9)0.0009 (8)
C30.0557 (14)0.0476 (11)0.0435 (14)0.0109 (11)0.0050 (11)0.0022 (10)
C40.0557 (12)0.0341 (9)0.0354 (11)−0.0017 (8)−0.0038 (10)0.0013 (10)
C50.0666 (14)0.0435 (12)0.0399 (13)−0.0135 (11)−0.0021 (12)0.0050 (10)
C60.0499 (13)0.0624 (14)0.0484 (14)−0.0136 (11)0.0036 (11)−0.0011 (12)
C70.0466 (12)0.0576 (13)0.0536 (15)0.0036 (10)−0.0017 (12)−0.0041 (14)
C80.0512 (12)0.0406 (10)0.0428 (13)0.0013 (9)−0.0046 (11)0.0037 (9)
C90.0473 (11)0.0344 (10)0.0293 (10)−0.0027 (8)−0.0052 (9)−0.0017 (8)
N10.0680 (12)0.0395 (9)0.0455 (11)0.0102 (8)0.0016 (10)0.0113 (10)
O10.0658 (11)0.0442 (8)0.0596 (11)−0.0002 (7)0.0058 (8)0.0163 (8)
C1—O11.218 (2)C5—C61.363 (3)
C1—C21.422 (3)C5—H50.9300
C1—H11.00 (2)C6—C71.390 (3)
C2—C31.372 (3)C6—H60.9300
C2—C91.441 (3)C7—C81.375 (3)
C3—N11.334 (3)C7—H70.9300
C3—H30.9300C8—C91.391 (3)
C4—N11.380 (3)C8—H80.9300
C4—C51.388 (3)N1—H1A0.94 (2)
C4—C91.396 (3)
O1—C1—C2125.4 (2)C5—C6—C7121.4 (2)
O1—C1—H1120.6 (14)C5—C6—H6119.3
C2—C1—H1114.0 (14)C7—C6—H6119.3
C3—C2—C1123.8 (2)C8—C7—C6121.4 (2)
C3—C2—C9105.93 (19)C8—C7—H7119.3
C1—C2—C9130.22 (19)C6—C7—H7119.3
N1—C3—C2110.8 (2)C7—C8—C9118.5 (2)
N1—C3—H3124.6C7—C8—H8120.7
C2—C3—H3124.6C9—C8—H8120.7
N1—C4—C5129.30 (19)C8—C9—C4118.84 (19)
N1—C4—C9107.95 (18)C8—C9—C2134.75 (19)
C5—C4—C9122.65 (19)C4—C9—C2106.31 (18)
C6—C5—C4117.2 (2)C3—N1—C4109.04 (17)
C6—C5—H5121.4C3—N1—H1A126.4 (16)
C4—C5—H5121.4C4—N1—H1A124.4 (16)
O1—C1—C2—C3177.2 (2)N1—C4—C9—C8−176.6 (2)
O1—C1—C2—C9−4.9 (4)C5—C4—C9—C80.1 (3)
C1—C2—C3—N1179.3 (2)N1—C4—C9—C20.2 (2)
C9—C2—C3—N11.0 (3)C5—C4—C9—C2176.9 (2)
N1—C4—C5—C6175.0 (2)C3—C2—C9—C8175.3 (2)
C9—C4—C5—C6−0.9 (3)C1—C2—C9—C8−2.8 (4)
C4—C5—C6—C70.7 (4)C3—C2—C9—C4−0.7 (2)
C5—C6—C7—C80.3 (4)C1—C2—C9—C4−178.9 (2)
C6—C7—C8—C9−1.1 (3)C2—C3—N1—C4−0.8 (3)
C7—C8—C9—C40.9 (3)C5—C4—N1—C3−176.0 (2)
C7—C8—C9—C2−174.8 (2)C9—C4—N1—C30.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.94 (3)1.92 (3)2.831 (2)165 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.94 (3)1.92 (3)2.831 (2)165 (3)

Symmetry code: (i) .

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