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Literature DB >> 24751511

Sizing up the poly(A) tail: insights from deep sequencing.

Abstract

Global investigation of poly(A) tails has been hindered by technical challenges. In a recent advance, two groups developed deep sequencing methods to globally interrogate poly(A) tail length and sequence with high precision, opening new avenues for investigation of poly(A) tail functions in mRNA metabolism. Initial applications of these methods reveal insights into the relationship between poly(A) tail length and translational efficiency, and identify widespread uridylation and guanylation at the 3' ends of transcripts.

Entities: CellLine Chemical Disease Gene Species

Keywords: mRNA stability; poly(A) tail; polyadenylation; post-transcriptional control; translation

Mesh：

Substances：

Year: 2014 PMID： 24751511 PMCID： PMC4369379 DOI： 10.1016/j.tibs.2014.04.002

Source DB: PubMed Journal: Trends Biochem Sci ISSN： 0968-0004 Impact factor: 13.807

10 in total

Review 1. Translational control by changes in poly(A) tail length: recycling mRNAs.

Authors: Laure Weill; Eulàlia Belloc; Felice-Alessio Bava; Raúl Méndez
Journal: Nat Struct Mol Biol Date: 2012-06-05 Impact factor: 15.369

Review 2. Mechanisms of deadenylation-dependent decay.

Authors: Chyi-Ying A Chen; Ann-Bin Shyu
Journal: Wiley Interdiscip Rev RNA Date: 2010-09-15 Impact factor: 9.957

3. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish.

Authors: Ariel A Bazzini; Miler T Lee; Antonio J Giraldez
Journal: Science Date: 2012-03-15 Impact factor: 47.728

4. TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications.

Authors: Hyeshik Chang; Jaechul Lim; Minju Ha; V Narry Kim
Journal: Mol Cell Date: 2014-02-27 Impact factor: 17.970

Review 5. Poly(A) tail metabolism and function in eucaryotes.

Authors: A Sachs; E Wahle
Journal: J Biol Chem Date: 1993-11-05 Impact factor: 5.157

6. Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors: Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal: Nature Date: 2010-08-12 Impact factor: 49.962

7. Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome.

Authors: Traude H Beilharz; Thomas Preiss
Journal: RNA Date: 2007-07 Impact factor: 4.942

8. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Authors: Michael A Quail; Miriam Smith; Paul Coupland; Thomas D Otto; Simon R Harris; Thomas R Connor; Anna Bertoni; Harold P Swerdlow; Yong Gu
Journal: BMC Genomics Date: 2012-07-24 Impact factor: 3.969

9. A novel method for poly(A) fractionation reveals a large population of mRNAs with a short poly(A) tail in mammalian cells.

Authors: Hedda A Meijer; Martin Bushell; Kirsti Hill; Timothy W Gant; Anne E Willis; Peter Jones; Cornelia H de Moor
Journal: Nucleic Acids Res Date: 2007-10-11 Impact factor: 16.971

10. Poly(A)-tail profiling reveals an embryonic switch in translational control.

Authors: Alexander O Subtelny; Stephen W Eichhorn; Grace R Chen; Hazel Sive; David P Bartel
Journal: Nature Date: 2014-01-29 Impact factor: 49.962

10 in total

11 in total

1. Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases.

Authors: Weimin Li; Wencheng Li; Rakesh S Laishram; Mainul Hoque; Zhe Ji; Bin Tian; Richard A Anderson
Journal: Nucleic Acids Res Date: 2017-09-06 Impact factor: 16.971

2. Star-PAP controlled alternative polyadenylation coupled poly(A) tail length regulates protein expression in hypertrophic heart.

Authors: A P Sudheesh; Nimmy Mohan; Nimmy Francis; Rakesh S Laishram; Richard A Anderson
Journal: Nucleic Acids Res Date: 2019-11-18 Impact factor: 16.971

Review 3. Determinants and implications of mRNA poly(A) tail size--does this protein make my tail look big?

Authors: Aimee L Jalkanen; Stephen J Coleman; Jeffrey Wilusz
Journal: Semin Cell Dev Biol Date: 2014-06-05 Impact factor: 7.727

Review 4. A recap of RNA recapping.

Authors: Jackson B Trotman; Daniel R Schoenberg
Journal: Wiley Interdiscip Rev RNA Date: 2018-09-05 Impact factor: 9.957

Review 5. Connections between 3' end processing and DNA damage response: Ten years later.

Authors: Michael Robert Murphy; Frida Esther Kleiman
Journal: Wiley Interdiscip Rev RNA Date: 2019-10-28 Impact factor: 9.957

6. circTAIL-seq, a targeted method for deep analysis of RNA 3' tails, reveals transcript-specific differences by multiple metrics.

Authors: Vahid H Gazestani; Marshall Hampton; Juan E Abrahante; Reza Salavati; Sara L Zimmer
Journal: RNA Date: 2016-01-12 Impact factor: 4.942

7. mTAIL-seq reveals dynamic poly(A) tail regulation in oocyte-to-embryo development.

Authors: Jaechul Lim; Mihye Lee; Ahyeon Son; Hyeshik Chang; V Narry Kim
Journal: Genes Dev Date: 2016-07-21 Impact factor: 11.361

8. The role of alternative polyadenylation in the antiviral innate immune response.

Authors: Xin Jia; Shaochun Yuan; Yao Wang; Yonggui Fu; Yong Ge; Yutong Ge; Xihong Lan; Yuchao Feng; Feifei Qiu; Peiyi Li; Shangwu Chen; Anlong Xu
Journal: Nat Commun Date: 2017-02-24 Impact factor: 14.919

9. PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation.

Authors: Yan Yang; Wencheng Li; Mainul Hoque; Liming Hou; Steven Shen; Bin Tian; Brian D Dynlacht
Journal: PLoS Genet Date: 2016-01-14 Impact factor: 5.917

10. pEVL: A Linear Plasmid for Generating mRNA IVT Templates With Extended Encoded Poly(A) Sequences.

Authors: Alexandra E Grier; Stephen Burleigh; Jaya Sahni; Courtnee A Clough; Victoire Cardot; Dongwook C Choe; Michelle C Krutein; David J Rawlings; Michael C Jensen; Andrew M Scharenberg; Kyle Jacoby
Journal: Mol Ther Nucleic Acids Date: 2016-04-19 Impact factor: 10.183