Literature DB >> 30252202

A recap of RNA recapping.

Jackson B Trotman1, Daniel R Schoenberg1.   

Abstract

The N7-methylguanosine cap is a hallmark of the 5' end of eukaryotic mRNAs and is required for gene expression. Loss of the cap was believed to lead irreversibly to decay. However, nearly a decade ago, it was discovered that mammalian cells contain enzymes in the cytoplasm that are capable of restoring caps onto uncapped RNAs. In this review, we summarize recent advances in our understanding of cytoplasmic RNA recapping and discuss the biochemistry of this process and its impact on regulating and diversifying the transcriptome. Although most studies focus on mammalian RNA recapping, we also highlight new observations for recapping in disparate eukaryotic organisms, with the trypanosome recapping system appearing to be a fascinating example of convergent evolution. We conclude with emerging insights into the biological significance of RNA recapping and prospects for the future of this evolving area of study. This article is categorized under: RNA Processing > RNA Editing and Modification Translation > Translation Regulation RNA Processing > Capping and 5' End Modifications RNA Turnover and Surveillance > Regulation of RNA Stability.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  capping; cytoplasm; m7G cap; transcriptome complexity; translational control

Mesh:

Substances:

Year:  2018        PMID: 30252202      PMCID: PMC6294674          DOI: 10.1002/wrna.1504

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  135 in total

Review 1.  Enzymology of RNA cap synthesis.

Authors:  Agnidipta Ghosh; Christopher D Lima
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-05-25       Impact factor: 9.957

2.  Characterization of a trifunctional mimivirus mRNA capping enzyme and crystal structure of the RNA triphosphatase domain.

Authors:  Delphine Benarroch; Paul Smith; Stewart Shuman
Journal:  Structure       Date:  2008-04       Impact factor: 5.006

Review 3.  Hedgehog signaling pathway: Epigenetic regulation and role in disease and cancer development.

Authors:  Sadegh Fattahi; Maryam Pilehchian Langroudi; Haleh Akhavan-Niaki
Journal:  J Cell Physiol       Date:  2018-03-07       Impact factor: 6.384

4.  Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5'-->3' digestion of the transcript.

Authors:  D Muhlrad; C J Decker; R Parker
Journal:  Genes Dev       Date:  1994-04-01       Impact factor: 11.361

5.  Post-transcriptional modifications of mRNA. Purification and characterization of cap I and cap II RNA (nucleoside-2'-)-methyltransferases from HeLa cells.

Authors:  S R Langberg; B Moss
Journal:  J Biol Chem       Date:  1981-10-10       Impact factor: 5.157

6.  Conditional inactivation of mRNA capping enzyme affects yeast pre-mRNA splicing in vivo.

Authors:  B Schwer; S Shuman
Journal:  RNA       Date:  1996-06       Impact factor: 4.942

7.  Beta -Globin mRNA decay in erythroid cells: UG site-preferred endonucleolytic cleavage that is augmented by a premature termination codon.

Authors:  Audrey Stevens; Yang Wang; Kirsten Bremer; Jing Zhang; Robert Hoepfner; Michael Antoniou; Daniel R Schoenberg; Lynne E Maquat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-19       Impact factor: 11.205

8.  CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors.

Authors:  Weifeng Gu; Heng-Chi Lee; Daniel Chaves; Elaine M Youngman; Gregory J Pazour; Darryl Conte; Craig C Mello
Journal:  Cell       Date:  2012-12-21       Impact factor: 41.582

9.  Multiplicity of 5' cap structures present on short RNAs.

Authors:  Rehab F Abdelhamid; Charles Plessy; Yoshio Yamauchi; Masato Taoka; Michiel de Hoon; Thomas R Gingeras; Toshiaki Isobe; Piero Carninci
Journal:  PLoS One       Date:  2014-07-31       Impact factor: 3.240

10.  Cap homeostasis is independent of poly(A) tail length.

Authors:  Daniel L Kiss; Kenji M Oman; Julie A Dougherty; Chandrama Mukherjee; Ralf Bundschuh; Daniel R Schoenberg
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

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  25 in total

1.  mRNA 5' ends targeted by cytoplasmic recapping cluster at CAGE tags and select transcripts are alternatively spliced.

Authors:  Mikaela R Berger; Rolando Alvarado; Daniel L Kiss
Journal:  FEBS Lett       Date:  2019-03-09       Impact factor: 4.124

2.  Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences.

Authors:  Agnes Karasik; Grant D Jones; Andrew V DePass; Nicholas R Guydosh
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

3.  Oncogenic PIK3CA mutations increase dependency on the mRNA cap methyltransferase, RNMT, in breast cancer cells.

Authors:  Sianadh Dunn; Olivia Lombardi; Radoslaw Lukoszek; Victoria H Cowling
Journal:  Open Biol       Date:  2019-04-26       Impact factor: 6.411

4.  Risk Model and Immune Signature of m7G-Related lncRNA Based on Lung Adenocarcinoma.

Authors:  Chuanhao Zhang; Dong Zhou; Zhe Wang; Zaishuang Ju; Jiabei He; Genghao Zhao; Ruoyu Wang
Journal:  Front Genet       Date:  2022-06-08       Impact factor: 4.772

5.  CAP-MAP: cap analysis protocol with minimal analyte processing, a rapid and sensitive approach to analysing mRNA cap structures.

Authors:  Alison Galloway; Abdelmadjid Atrih; Renata Grzela; Edward Darzynkiewicz; Michael A J Ferguson; Victoria H Cowling
Journal:  Open Biol       Date:  2020-02-26       Impact factor: 6.411

Review 6.  mRNA cap regulation in mammalian cell function and fate.

Authors:  Alison Galloway; Victoria H Cowling
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2018-10-09       Impact factor: 4.490

7.  Analyzing (Re)Capping of mRNA Using Transcript Specific 5' End Sequencing.

Authors:  Daniel Del Valle Morales; Daniel R Schoenberg
Journal:  Bio Protoc       Date:  2020-10-20

8.  The translation initiation factor EIF4E5 from Leishmania: crystal structure and interacting partners.

Authors:  Gustavo Barbosa de Lima; Thaíse Yasmine Vasconcelos de Lima Cavalcanti; Adriana Neuman Albuquerque Lins Moura de Brito; Ludmilla Arruda de Assis; Rafaela Paiva Andrade-Vieira; Eden Ribeiro Freire; Tatiana Reichert da Silva Assunção; Christian Robson de Souza Reis; Nilson Ivo Tonin Zanchin; Beatriz Gomes Guimarães; Osvaldo Pompílio de-Melo-Neto
Journal:  RNA Biol       Date:  2021-05-04       Impact factor: 4.652

9.  mRNA decapping is an evolutionarily conserved modulator of neuroendocrine signaling that controls development and ageing.

Authors:  Fivos Borbolis; John Rallis; George Kanatouris; Nikolitsa Kokla; Antonis Karamalegkos; Christina Vasileiou; Katerina M Vakaloglou; George Diallinas; Dimitrios J Stravopodis; Christos G Zervas; Popi Syntichaki
Journal:  Elife       Date:  2020-05-05       Impact factor: 8.140

Review 10.  mRNA Metabolism in Cardiac Development and Disease: Life After Transcription.

Authors:  Chen Gao; Yibin Wang
Journal:  Physiol Rev       Date:  2019-11-21       Impact factor: 37.312

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