Literature DB >> 23664777

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Thomas Gaj1, Charles A Gersbach, Carlos F Barbas.   

Abstract

Zinc-finger nucleases (ZFNs) and transcription activator-like effector nucleases (TALENs) comprise a powerful class of tools that are redefining the boundaries of biological research. These chimeric nucleases are composed of programmable, sequence-specific DNA-binding modules linked to a nonspecific DNA cleavage domain. ZFNs and TALENs enable a broad range of genetic modifications by inducing DNA double-strand breaks that stimulate error-prone nonhomologous end joining or homology-directed repair at specific genomic locations. Here, we review achievements made possible by site-specific nuclease technologies and discuss applications of these reagents for genetic analysis and manipulation. In addition, we highlight the therapeutic potential of ZFNs and TALENs and discuss future prospects for the field, including the emergence of clustered regulatory interspaced short palindromic repeat (CRISPR)/Cas-based RNA-guided DNA endonucleases.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23664777      PMCID: PMC3694601          DOI: 10.1016/j.tibtech.2013.04.004

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  119 in total

1.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

2.  Targeted gene knockout by direct delivery of zinc-finger nuclease proteins.

Authors:  Thomas Gaj; Jing Guo; Yoshio Kato; Shannon J Sirk; Carlos F Barbas
Journal:  Nat Methods       Date:  2012-07-01       Impact factor: 28.547

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Authors:  Jesse B Owens; Johann Urschitz; Ilko Stoytchev; Nong C Dang; Zoia Stoytcheva; Mahdi Belcaid; Kommineni J Maragathavally; Craig J Coates; David J Segal; Stefan Moisyadi
Journal:  Nucleic Acids Res       Date:  2012-04-09       Impact factor: 16.971

4.  Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers.

Authors:  Adrian W Briggs; Xavier Rios; Raj Chari; Luhan Yang; Feng Zhang; Prashant Mali; George M Church
Journal:  Nucleic Acids Res       Date:  2012-06-26       Impact factor: 16.971

5.  An optimized two-finger archive for ZFN-mediated gene targeting.

Authors:  Ankit Gupta; Ryan G Christensen; Amy L Rayla; Abirami Lakshmanan; Gary D Stormo; Scot A Wolfe
Journal:  Nat Methods       Date:  2012-04-29       Impact factor: 28.547

6.  Precision genome engineering with programmable DNA-nicking enzymes.

Authors:  Eunji Kim; Sojung Kim; Duk Hyoung Kim; Beom-Soon Choi; Ik-Young Choi; Jin-Soo Kim
Journal:  Genome Res       Date:  2012-04-20       Impact factor: 9.043

7.  Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme.

Authors:  Jianbin Wang; Geoffrey Friedman; Yannick Doyon; Nathaniel S Wang; Carrie Jiaxin Li; Jeffrey C Miller; Kevin L Hua; Jenny Jiacheng Yan; Joshua E Babiarz; Philip D Gregory; Michael C Holmes
Journal:  Genome Res       Date:  2012-03-20       Impact factor: 9.043

8.  Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects.

Authors:  Cherie L Ramirez; Michael T Certo; Claudio Mussolino; Mathew J Goodwin; Thomas J Cradick; Anton P McCaffrey; Toni Cathomen; Andrew M Scharenberg; J Keith Joung
Journal:  Nucleic Acids Res       Date:  2012-02-28       Impact factor: 16.971

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Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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Authors:  Amartya Sanyal; Bryan R Lajoie; Gaurav Jain; Job Dekker
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

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Review 6.  Application of Mouse Models to Research in Hearing and Balance.

Authors:  Kevin K Ohlemiller; Sherri M Jones; Kenneth R Johnson
Journal:  J Assoc Res Otolaryngol       Date:  2016-10-17

Review 7.  Sound strategies for hearing restoration.

Authors:  Gwenaëlle S G Géléoc; Jeffrey R Holt
Journal:  Science       Date:  2014-05-09       Impact factor: 47.728

8.  Targeted genome editing in Aedes aegypti using TALENs.

Authors:  Azadeh Aryan; Kevin M Myles; Zach N Adelman
Journal:  Methods       Date:  2014-02-18       Impact factor: 3.608

9.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

10.  Effects of HPV Pseudotype Virus in Cutting E6 Gene Selectively in SiHa Cells.

Authors:  Yan-Xiang Cheng; Gan-Tao Chen; Xiao Yang; Yan-Qing Wang; Li Hong
Journal:  Curr Med Sci       Date:  2018-04-30
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