Literature DB >> 24740073

A quality control program within a clinical trial Consortium for PCR protocols to detect Plasmodium species.

Steve M Taylor1, Alfredo Mayor2, Ghyslain Mombo-Ngoma3, Hilaire M Kenguele4, Smaïla Ouédraogo5, Nicaise Tuikue Ndam6, Happy Mkali7, Grace Mwangoka7, Neena Valecha8, Jai Prakash Narayan Singh8, Martha A Clark9, Jaco J Verweij10, Ayola Akim Adegnika11, Carlo Severini12, Michela Menegon12, Eusebio Macete13, Clara Menendez2, Pau Cisteró14, Fanta Njie15, Muna Affara15, Kephas Otieno16, Simon Kariuki16, Feiko O ter Kuile17, Steven R Meshnick18.   

Abstract

Malaria parasite infections that are only detectable by molecular methods are highly prevalent and represent a potential transmission reservoir. The methods used to detect these infections are not standardized, and their operating characteristics are often unknown. We designed a proficiency panel of Plasmodium spp. in order to compare the accuracy of parasite detection of molecular protocols used by labs in a clinical trial consortium. Ten dried blood spots (DBSs) were assembled that contained P. falciparum, P. vivax, P. malariae, and P. ovale; DBSs contained either a single species or a species mixed with P. falciparum. DBS panels were tested in 9 participating laboratories in a masked fashion. Of 90 tests, 68 (75.6%) were correct; there were 20 false-negative results and 2 false positives. The detection rate was 77.8% (49/63) for P. falciparum, 91.7% (11/12) for P. vivax, 83.3% (10/12) for P. malariae, and 70% (7/10) for P. ovale. Most false-negative P. falciparum results were from samples with an estimated ≤ 5 parasites per μl of blood. Between labs, accuracy ranged from 100% to 50%. In one lab, the inability to detect species in mixed-species infections prompted a redesign and improvement of the assay. Most PCR-based protocols were able to detect P. falciparum and P. vivax at higher densities, but these assays may not reliably detect parasites in samples with low P. falciparum densities. Accordingly, formal quality assurance for PCR should be employed whenever this method is used for diagnosis or surveillance. Such efforts will be important if PCR is to be widely employed to assist malaria elimination efforts.
Copyright © 2014, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 24740073      PMCID: PMC4042732          DOI: 10.1128/JCM.00565-14

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  27 in total

1.  Genotyping external quality assurance in the World Health Organization HIV drug resistance laboratory network during 2007-2010.

Authors:  Neil Parkin; James Bremer; Silvia Bertagnolio
Journal:  Clin Infect Dis       Date:  2012-05       Impact factor: 9.079

2.  Sources of variability in determining malaria parasite density by microscopy.

Authors:  Wendy Prudhomme O'Meara; F Ellis McKenzie; Alan J Magill; J Russ Forney; Barnyen Permpanich; Carmen Lucas; Robert A Gasser; Chansuda Wongsrichanalai
Journal:  Am J Trop Med Hyg       Date:  2005-09       Impact factor: 2.345

3.  Impact of competitive inhibition and sequence variation upon the sensitivity of malaria PCR.

Authors:  Seweryn Bialasiewicz; David M Whiley; Michael D Nissen; Theo P Sloots
Journal:  J Clin Microbiol       Date:  2007-02-28       Impact factor: 5.948

4.  High-throughput pooling and real-time PCR-based strategy for malaria detection.

Authors:  Steve M Taylor; Jonathan J Juliano; Paul A Trottman; Jennifer B Griffin; Sarah H Landis; Paluku Kitsa; Antoinette K Tshefu; Steven R Meshnick
Journal:  J Clin Microbiol       Date:  2009-11-25       Impact factor: 5.948

5.  Guidance on the development and validation of diagnostic tests that depend on nucleic acid amplification and detection.

Authors:  Nick Saunders; Maria Zambon; Ian Sharp; Ruhi Siddiqui; Alison Bermingham; Joanna Ellis; Barry Vipond; Andrew Sails; Jacob Moran-Gilad; Peter Marsh; Malcolm Guiver
Journal:  J Clin Virol       Date:  2012-12-14       Impact factor: 3.168

6.  Detection of four Plasmodium species in blood from humans by 18S rRNA gene subunit-based and species-specific real-time PCR assays.

Authors:  Mathieu Rougemont; Madeleine Van Saanen; Roland Sahli; Hans Peter Hinrikson; Jacques Bille; Katia Jaton
Journal:  J Clin Microbiol       Date:  2004-12       Impact factor: 5.948

7.  Plasmodium malariae infection in spite of previous anti-malarial medication.

Authors:  Irmela Müller-Stöver; Jaco J Verweij; Barbara Hoppenheit; Klaus Göbels; Dieter Häussinger; Joachim Richter
Journal:  Parasitol Res       Date:  2007-12-02       Impact factor: 2.289

Review 8.  Rapid diagnostic tests for diagnosing uncomplicated P. falciparum malaria in endemic countries.

Authors:  Katharine Abba; Jonathan J Deeks; Piero Olliaro; Cho-Min Naing; Sally M Jackson; Yemisi Takwoingi; Sarah Donegan; Paul Garner
Journal:  Cochrane Database Syst Rev       Date:  2011-07-06

9.  Quantitative real-time polymerase chain reaction for malaria diagnosis and its use in malaria vaccine clinical trials.

Authors:  Laura Andrews; Rikke F Andersen; Daniel Webster; Susanna Dunachie; R Michael Walther; Philip Bejon; Angela Hunt-Cooke; Gillian Bergson; Frances Sanderson; Adrian V S Hill; Sarah C Gilbert
Journal:  Am J Trop Med Hyg       Date:  2005-07       Impact factor: 2.345

10.  Factors determining the occurrence of submicroscopic malaria infections and their relevance for control.

Authors:  Lucy C Okell; Teun Bousema; Jamie T Griffin; André Lin Ouédraogo; Azra C Ghani; Chris J Drakeley
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

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Journal:  Am J Trop Med Hyg       Date:  2015-06-22       Impact factor: 2.345

2.  Safety, immunogenicity and efficacy of PfSPZ Vaccine against malaria in infants in western Kenya: a double-blind, randomized, placebo-controlled phase 2 trial.

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3.  Accuracy of verbal autopsy, clinical data and minimally invasive autopsy in the evaluation of malaria-specific mortality: an observational study.

Authors:  Clara Menéndez; Jaume Ordi; Natalia Rakislova; Dercio Jordao; Mamudo R Ismail; Alfredo Mayor; Pau Cisteró; Lorena Marimon; Melania Ferrando; Juan Carlos Hurtado; Lucilia Lovane; Carla Carrilho; Cesaltina Lorenzoni; Fabiola Fernandes; Tacilta Nhampossa; Anelsio Cossa; Inacio Mandomando; Mireia Navarro; Isaac Casas; Khatia Munguambe; Maria Maixenchs; Llorenç Quintó; Eusebio Macete; Mikel Martinez; Robert W Snow; Quique Bassat
Journal:  BMJ Glob Health       Date:  2021-06

Review 4.  Malaria Diagnosis Across the International Centers of Excellence for Malaria Research: Platforms, Performance, and Standardization.

Authors:  Tamaki Kobayashi; Dionicia Gamboa; Daouda Ndiaye; Liwang Cui; Patrick L Sutton; Joseph M Vinetz
Journal:  Am J Trop Med Hyg       Date:  2015-08-10       Impact factor: 2.345

5.  Characterization of Plasmodium ovale curtisi and P. ovale wallikeri in Western Kenya utilizing a novel species-specific real-time PCR assay.

Authors:  Robin H Miller; Clifford O Obuya; Elizabeth W Wanja; Bernhards Ogutu; John Waitumbi; Shirley Luckhart; V Ann Stewart
Journal:  PLoS Negl Trop Dis       Date:  2015-01-15

6.  Molecular surveillance of pfhrp2 and pfhrp3 deletions in Plasmodium falciparum isolates from Mozambique.

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Journal:  Malar J       Date:  2017-10-16       Impact factor: 2.979

7.  Drug-Resistant Polymorphisms and Copy Numbers in Plasmodium falciparum, Mozambique, 2015.

Authors:  Himanshu Gupta; Eusebio Macete; Helder Bulo; Crizolgo Salvador; Marian Warsame; Eva Carvalho; Didier Ménard; Pascal Ringwald; Quique Bassat; Sonia Enosse; Alfredo Mayor
Journal:  Emerg Infect Dis       Date:  2018-01       Impact factor: 6.883

8.  Resisting and tolerating P. falciparum in pregnancy under different malaria transmission intensities.

Authors:  Nicaise Tuikue Ndam; Emmanuel Mbuba; Raquel González; Pau Cisteró; Simon Kariuki; Esperança Sevene; María Rupérez; Ana Maria Fonseca; Anifa Vala; Sonia Maculuve; Alfons Jiménez; Llorenç Quintó; Peter Ouma; Michael Ramharter; John J Aponte; Arsenio Nhacolo; Achille Massougbodji; Valerie Briand; Peter G Kremsner; Ghyslain Mombo-Ngoma; Meghna Desai; Eusebio Macete; Michel Cot; Clara Menéndez; Alfredo Mayor
Journal:  BMC Med       Date:  2017-07-17       Impact factor: 8.775

9.  In-Vivo Efficacy of Chloroquine to Clear Asymptomatic Infections in Mozambican Adults: A Randomized, Placebo-controlled Trial with Implications for Elimination Strategies.

Authors:  Beatriz Galatas; Lidia Nhamussua; Baltazar Candrinho; Lurdes Mabote; Pau Cisteró; Himanshu Gupta; Regina Rabinovich; Clara Menéndez; Eusebio Macete; Francisco Saute; Alfredo Mayor; Pedro Alonso; Quique Bassat; Pedro Aide
Journal:  Sci Rep       Date:  2017-05-02       Impact factor: 4.379

10.  A nested real-time PCR assay for the quantification of Plasmodium falciparum DNA extracted from dried blood spots.

Authors:  Tuan M Tran; Amirali Aghili; Shanping Li; Aissata Ongoiba; Kassoum Kayentao; Safiatou Doumbo; Boubacar Traore; Peter D Crompton
Journal:  Malar J       Date:  2014-10-04       Impact factor: 2.979

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