Literature DB >> 24730874

RNA topology remolds electrostatic stabilization of viruses.

Gonca Erdemci-Tandogan1, Jef Wagner1, Paul van der Schoot2, Rudolf Podgornik3, Roya Zandi1.   

Abstract

Simple RNA viruses efficiently encapsulate their genome into a nano-sized protein shell: the capsid. Spontaneous coassembly of the genome and the capsid proteins is driven predominantly by electrostatic interactions between the negatively charged RNA and the positively charged inner capsid wall. Using field theoretic formulation we show that the inherently branched RNA secondary structure allows viruses to maximize the amount of encapsulated genome and make assembly more efficient, allowing viral RNAs to out-compete cellular RNAs during replication in infected host cells.

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Year:  2014        PMID: 24730874     DOI: 10.1103/PhysRevE.89.032707

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  25 in total

1.  Synonymous mutations reduce genome compactness in icosahedral ssRNA viruses.

Authors:  Luca Tubiana; Anže Lošdorfer Božič; Cristian Micheletti; Rudolf Podgornik
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

Review 2.  Nanocaged platforms: modification, drug delivery and nanotoxicity. Opening synthetic cages to release the tiger.

Authors:  Mahdi Karimi; Parham Sahandi Zangabad; Fatemeh Mehdizadeh; Hedieh Malekzad; Alireza Ghasemi; Sajad Bahrami; Hossein Zare; Mohsen Moghoofei; Amin Hekmatmanesh; Michael R Hamblin
Journal:  Nanoscale       Date:  2017-01-26       Impact factor: 7.790

3.  Electrostatics-Driven Inflation of Elastic Icosahedral Shells as a Model for Swelling of Viruses.

Authors:  Anže Lošdorfer Božič; Antonio Šiber
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

Review 4.  Recent advances in coarse-grained modeling of virus assembly.

Authors:  Michael F Hagan; Roya Zandi
Journal:  Curr Opin Virol       Date:  2016-03-24       Impact factor: 7.090

5.  Confining annealed branched polymers inside spherical capsids.

Authors:  Alexander Y Grosberg; Robijn Bruinsma
Journal:  J Biol Phys       Date:  2018-02-14       Impact factor: 1.365

Review 6.  Mechanisms of virus assembly.

Authors:  Jason D Perlmutter; Michael F Hagan
Journal:  Annu Rev Phys Chem       Date:  2014-12-17       Impact factor: 12.703

7.  The Role of Packaging Sites in Efficient and Specific Virus Assembly.

Authors:  Jason D Perlmutter; Michael F Hagan
Journal:  J Mol Biol       Date:  2015-05-16       Impact factor: 5.469

8.  Role of electrostatics in the assembly pathway of a single-stranded RNA virus.

Authors:  Rees F Garmann; Mauricio Comas-Garcia; Melissa S T Koay; Jeroen J L M Cornelissen; Charles M Knobler; William M Gelbart
Journal:  J Virol       Date:  2014-06-25       Impact factor: 5.103

Review 9.  RNA-Mediated Virus Assembly: Mechanisms and Consequences for Viral Evolution and Therapy.

Authors:  Reidun Twarock; Peter G Stockley
Journal:  Annu Rev Biophys       Date:  2019-04-05       Impact factor: 12.981

10.  Mechanisms of Scaffold-Mediated Microcompartment Assembly and Size Control.

Authors:  Farzaneh Mohajerani; Evan Sayer; Christopher Neil; Koe Inlow; Michael F Hagan
Journal:  ACS Nano       Date:  2021-03-08       Impact factor: 15.881

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