Literature DB >> 29442192

Confining annealed branched polymers inside spherical capsids.

Alexander Y Grosberg1, Robijn Bruinsma2,3.   

Abstract

The Lifshitz equation for the confinement of a linear polymer in a spherical cavity of radius R has the form of the Schrödinger equation for a quantum particle trapped in a potential well with flat bottom and infinite walls at radius R. We show that the Lifshitz equation of a confined annealed branched polymer has the form of the Schrödinger equation for a quantum harmonic oscillator. The resulting confinement energy has a 1/R4 dependence on the confinement radius R, in contrast to the case of confined linear polymers, which have a 1/R2 dependence. We discuss the application of this result to the problem of the confinement of single-stranded RNA molecules inside spherical capsids.

Entities:  

Keywords:  Branched polymers; Confinement; Viral RNA

Mesh:

Substances:

Year:  2018        PMID: 29442192      PMCID: PMC5928018          DOI: 10.1007/s10867-018-9483-x

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  13 in total

1.  Visualizing large RNA molecules in solution.

Authors:  Ajaykumar Gopal; Z Hong Zhou; Charles M Knobler; William M Gelbart
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

2.  Role of RNA Branchedness in the Competition for Viral Capsid Proteins.

Authors:  Surendra W Singaram; Rees F Garmann; Charles M Knobler; William M Gelbart; Avinoam Ben-Shaul
Journal:  J Phys Chem B       Date:  2015-10-19       Impact factor: 2.991

3.  Predicting the sizes of large RNA molecules.

Authors:  Aron M Yoffe; Peter Prinsen; Ajaykumar Gopal; Charles M Knobler; William M Gelbart; Avinoam Ben-Shaul
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-09       Impact factor: 11.205

4.  RNA topology remolds electrostatic stabilization of viruses.

Authors:  Gonca Erdemci-Tandogan; Jef Wagner; Paul van der Schoot; Rudolf Podgornik; Roya Zandi
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-03-14

5.  Equilibrium self-assembly of small RNA viruses.

Authors:  R F Bruinsma; M Comas-Garcia; R F Garmann; A Y Grosberg
Journal:  Phys Rev E       Date:  2016-03-09       Impact factor: 2.529

6.  Sequence Dependence of Viral RNA Encapsidation.

Authors:  Joshua Kelly; Alexander Y Grosberg; Robijn Bruinsma
Journal:  J Phys Chem B       Date:  2016-06-02       Impact factor: 2.991

7.  Statistics of branching and hairpin helices for the dAT copolymer.

Authors:  P G de Gennes
Journal:  Biopolymers       Date:  1968       Impact factor: 2.505

8.  Impact of a nonuniform charge distribution on virus assembly.

Authors:  Siyu Li; Gonca Erdemci-Tandogan; Jef Wagner; Paul van der Schoot; Roya Zandi
Journal:  Phys Rev E       Date:  2017-08-07       Impact factor: 2.529

9.  The size of RNA as an ideal branched polymer.

Authors:  Li Tai Fang; William M Gelbart; Avinoam Ben-Shaul
Journal:  J Chem Phys       Date:  2011-10-21       Impact factor: 3.488

10.  The assembly pathway of an icosahedral single-stranded RNA virus depends on the strength of inter-subunit attractions.

Authors:  Rees F Garmann; Mauricio Comas-Garcia; Ajaykumar Gopal; Charles M Knobler; William M Gelbart
Journal:  J Mol Biol       Date:  2013-10-19       Impact factor: 5.469

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.