Literature DB >> 24684931

The Vasa Homolog RDE-12 engages target mRNA and multiple argonaute proteins to promote RNAi in C. elegans.

Masaki Shirayama1, William Stanney2, Weifeng Gu2, Meetu Seth1, Craig C Mello3.   

Abstract

Argonaute (AGO) proteins are key nuclease effectors of RNAi. Although purified AGOs can mediate a single round of target RNA cleavage in vitro, accessory factors are required for small interfering RNA (siRNA) loading and to achieve multiple-target turnover. To identify AGO cofactors, we immunoprecipitated the C. elegans AGO WAGO-1, which engages amplified small RNAs during RNAi. These studies identified a robust association between WAGO-1 and a conserved Vasa ATPase-related protein RDE-12. rde-12 mutants are deficient in RNAi, including viral suppression, and fail to produce amplified secondary siRNAs and certain endogenous siRNAs (endo-siRNAs). RDE-12 colocalizes with WAGO-1 in germline P granules and in cytoplasmic and perinuclear foci in somatic cells. These findings and our genetic studies suggest that RDE-12 is first recruited to target mRNA by upstream AGOs (RDE-1 and ERGO-1), where it promotes small RNA amplification and/or WAGO-1 loading. Downstream of these events, RDE-12 forms an RNase-resistant (target mRNA-independent) complex with WAGO-1 and may thus have additional functions in target mRNA surveillance and silencing.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24684931      PMCID: PMC4017897          DOI: 10.1016/j.cub.2014.03.008

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  42 in total

1.  EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans.

Authors:  A Smardon; J M Spoerke; S C Stacey; M E Klein; N Mackin; E M Maine
Journal:  Curr Biol       Date:  2000-02-24       Impact factor: 10.834

2.  Perinuclear P granules are the principal sites of mRNA export in adult C. elegans germ cells.

Authors:  Ujwal Sheth; Jason Pitt; Shannon Dennis; James R Priess
Journal:  Development       Date:  2010-03-10       Impact factor: 6.868

3.  Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway.

Authors:  Jessica J Vasale; Weifeng Gu; Caroline Thivierge; Pedro J Batista; Julie M Claycomb; Elaine M Youngman; Thomas F Duchaine; Craig C Mello; Darryl Conte
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

Review 4.  Molecular mechanisms of RNA interference.

Authors:  Ross C Wilson; Jennifer A Doudna
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

5.  On the role of RNA amplification in dsRNA-triggered gene silencing.

Authors:  T Sijen; J Fleenor; F Simmer; K L Thijssen; S Parrish; L Timmons; R H Plasterk; A Fire
Journal:  Cell       Date:  2001-11-16       Impact factor: 41.582

6.  The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification.

Authors:  Chi Zhang; Taiowa A Montgomery; Sylvia E J Fischer; Susana M D A Garcia; Christian G Riedel; Noah Fahlgren; Christopher M Sullivan; James C Carrington; Gary Ruvkun
Journal:  Curr Biol       Date:  2012-04-26       Impact factor: 10.834

7.  Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster.

Authors:  Ai Khim Lim; Toshie Kai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-11       Impact factor: 11.205

8.  C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts.

Authors:  Heng-Chi Lee; Weifeng Gu; Masaki Shirayama; Elaine Youngman; Darryl Conte; Craig C Mello
Journal:  Cell       Date:  2012-06-25       Impact factor: 41.582

9.  PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.

Authors:  Pedro J Batista; J Graham Ruby; Julie M Claycomb; Rosaria Chiang; Noah Fahlgren; Kristin D Kasschau; Daniel A Chaves; Weifeng Gu; Jessica J Vasale; Shenghua Duan; Darryl Conte; Shujun Luo; Gary P Schroth; James C Carrington; David P Bartel; Craig C Mello
Journal:  Mol Cell       Date:  2008-06-19       Impact factor: 17.970

10.  Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Authors:  Weifeng Gu; Masaki Shirayama; Darryl Conte; Jessica Vasale; Pedro J Batista; Julie M Claycomb; James J Moresco; Elaine M Youngman; Jennifer Keys; Matthew J Stoltz; Chun-Chieh G Chen; Daniel A Chaves; Shenghua Duan; Kristin D Kasschau; Noah Fahlgren; John R Yates; Shohei Mitani; James C Carrington; Craig C Mello
Journal:  Mol Cell       Date:  2009-10-01       Impact factor: 17.970

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  14 in total

1.  Targeted Chromosomal Translocations and Essential Gene Knockout Using CRISPR/Cas9 Technology in Caenorhabditis elegans.

Authors:  Xiangyang Chen; Mu Li; Xuezhu Feng; Shouhong Guang
Journal:  Genetics       Date:  2015-10-19       Impact factor: 4.562

2.  The RNAi Inheritance Machinery of Caenorhabditis elegans.

Authors:  George Spracklin; Brandon Fields; Gang Wan; Diveena Becker; Ashley Wallig; Aditi Shukla; Scott Kennedy
Journal:  Genetics       Date:  2017-05-22       Impact factor: 4.562

3.  Early Developmental Exposure to dsRNA Is Critical for Initiating Efficient Nuclear RNAi in C. elegans.

Authors:  Philip K Shiu; Craig P Hunter
Journal:  Cell Rep       Date:  2017-03-21       Impact factor: 9.423

Review 4.  Germ granules and gene regulation in the Caenorhabditis elegans germline.

Authors:  Carolyn M Phillips; Dustin L Updike
Journal:  Genetics       Date:  2022-03-03       Impact factor: 4.402

5.  P granules.

Authors:  Jennifer T Wang; Geraldine Seydoux
Journal:  Curr Biol       Date:  2014-07-21       Impact factor: 10.834

6.  A ribonuclease coordinates siRNA amplification and mRNA cleavage during RNAi.

Authors:  Hsin-Yue Tsai; Chun-Chieh G Chen; Darryl Conte; James J Moresco; Daniel A Chaves; Shohei Mitani; John R Yates; Ming-Daw Tsai; Craig C Mello
Journal:  Cell       Date:  2015-01-29       Impact factor: 41.582

7.  Dual sgRNA-directed gene knockout using CRISPR/Cas9 technology in Caenorhabditis elegans.

Authors:  Xiangyang Chen; Fei Xu; Chengming Zhu; Jiaojiao Ji; Xufei Zhou; Xuezhu Feng; Shouhong Guang
Journal:  Sci Rep       Date:  2014-12-22       Impact factor: 4.379

8.  MiR-35 buffers apoptosis thresholds in the C. elegans germline by antagonizing both MAPK and core apoptosis pathways.

Authors:  Anh T Tran; Eric M Chapman; Mathieu N Flamand; Bin Yu; Samuel J Krempel; Thomas F Duchaine; Matthew Eroglu; W Brent Derry
Journal:  Cell Death Differ       Date:  2019-04-05       Impact factor: 15.828

9.  A tudor domain protein, SIMR-1, promotes siRNA production at piRNA-targeted mRNAs in C. elegans.

Authors:  Kevin I Manage; Alicia K Rogers; Dylan C Wallis; Celja J Uebel; Dorian C Anderson; Dieu An H Nguyen; Katerina Arca; Kristen C Brown; Ricardo J Cordeiro Rodrigues; Bruno Fm de Albuquerque; René F Ketting; Taiowa A Montgomery; Carolyn Marie Phillips
Journal:  Elife       Date:  2020-04-27       Impact factor: 8.140

Review 10.  New Family Members of FG Repeat Proteins and Their Unexplored Roles During Phase Separation.

Authors:  Yoichi Shinkai; Masahiro Kuramochi; Takamitsu Miyafusa
Journal:  Front Cell Dev Biol       Date:  2021-07-12
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