Literature DB >> 32684895

Information gain from isotopic contrast variation in neutron reflectometry on protein-membrane complex structures.

Frank Heinrich1,2, Paul A Kienzle2, David P Hoogerheide2, Mathias Lösche1,2,3.   

Abstract

A framework is applied to quantify information gain from neutron or X-ray reflectometry experiments [Treece, Kienzle, Hoogerheide, Majkrzak, Lösche & Heinrich (2019). J. Appl. Cryst. 52, 47-59], in an in-depth investigation into the design of scattering contrast in biological and soft-matter surface architectures. To focus the experimental design on regions of interest, the marginalization of the information gain with respect to a subset of model parameters describing the structure is implemented. Surface architectures of increasing complexity from a simple model system to a protein-lipid membrane complex are simulated. The information gain from virtual surface scattering experiments is quantified as a function of the scattering length density of molecular components of the architecture and the surrounding aqueous bulk solvent. It is concluded that the information gain is mostly determined by the local scattering contrast of a feature of interest with its immediate molecular environment, and experimental design should primarily focus on this region. The overall signal-to-noise ratio of the measured reflectivity modulates the information gain globally and is a second factor to be taken into consideration. © International Union of Crystallography 2020.

Entities:  

Keywords:  experimental optimization; information content; marginal posterior entropy; neutron reflectometry; protein–membrane complex

Year:  2020        PMID: 32684895      PMCID: PMC7312142          DOI: 10.1107/S1600576720005634

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  21 in total

1.  Continuous distribution model for the investigation of complex molecular architectures near interfaces with scattering techniques.

Authors:  Prabhanshu Shekhar; Hirsh Nanda; Mathias Lösche; Frank Heinrich
Journal:  J Appl Phys       Date:  2011-11-30       Impact factor: 2.546

2.  Deuteration in Biological Neutron Reflectometry.

Authors:  Frank Heinrich
Journal:  Methods Enzymol       Date:  2015-06-30       Impact factor: 1.600

3.  The antimicrobial peptide maculatin self assembles in parallel to form a pore in phospholipid bilayers.

Authors:  Marc-Antoine Sani; Anton P Le Brun; Frances Separovic
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-01-23       Impact factor: 3.747

4.  Structural features and lipid binding domain of tubulin on biomimetic mitochondrial membranes.

Authors:  David P Hoogerheide; Sergei Y Noskov; Daniel Jacobs; Lucie Bergdoll; Vitalii Silin; David L Worcester; Jeff Abramson; Hirsh Nanda; Tatiana K Rostovtseva; Sergey M Bezrukov
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-18       Impact factor: 11.205

Review 5.  Zooming in on disordered systems: neutron reflection studies of proteins associated with fluid membranes.

Authors:  Frank Heinrich; Mathias Lösche
Journal:  Biochim Biophys Acta       Date:  2014-03-25

6.  Solid supported lipid membranes: new concepts for the biomimetic functionalization of solid surfaces.

Authors:  W Knoll; R Naumann; M Friedrich; J W F Robertson; M Lösche; F Heinrich; D J McGillivray; B Schuster; P C Gufler; D Pum; U B Sleytr
Journal:  Biointerphases       Date:  2008-06       Impact factor: 2.456

7.  Modification of tethered bilayers by phospholipid exchange with vesicles.

Authors:  Rima Budvytyte; Mindaugas Mickevicius; David J Vanderah; Frank Heinrich; Gintaras Valincius
Journal:  Langmuir       Date:  2013-03-18       Impact factor: 3.882

8.  Membrane association of the PTEN tumor suppressor: electrostatic interaction with phosphatidylserine-containing bilayers and regulatory role of the C-terminal tail.

Authors:  Siddharth S Shenoy; Hirsh Nanda; Mathias Lösche
Journal:  J Struct Biol       Date:  2012-10-13       Impact factor: 2.867

9.  Conformational transition of membrane-associated terminally acylated HIV-1 Nef.

Authors:  Bulent Akgun; Sushil Satija; Hirsh Nanda; Gregory F Pirrone; Xiaomeng Shi; John R Engen; Michael S Kent
Journal:  Structure       Date:  2013-09-12       Impact factor: 5.006

10.  Measurement and modeling of polarized specular neutron reflectivity in large magnetic fields.

Authors:  Brian B Maranville; Brian J Kirby; Alexander J Grutter; Paul A Kienzle; Charles F Majkrzak; Yaohua Liu; Cindi L Dennis
Journal:  J Appl Crystallogr       Date:  2016-06-09       Impact factor: 3.304

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  1 in total

1.  Optimizing experimental design in neutron reflectometry.

Authors:  James H Durant; Lucas Wilkins; Joshaniel F K Cooper
Journal:  J Appl Crystallogr       Date:  2022-06-23       Impact factor: 4.868

  1 in total

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