Literature DB >> 24655519

Open and closed conformations of the isolated transmembrane domain of death receptor 5 support a new model of activation.

Andrew K Lewis1, Zachary M James2, Jesse E McCaffrey2, Anthony R Braun1, Christine B Karim2, David D Thomas2, Jonathan N Sachs3.   

Abstract

It has long been presumed that activation of the apoptosis-initiating Death Receptor 5, as well as other structurally homologous members of the TNF-receptor superfamily, relies on ligand-stabilized trimerization of noninteracting receptor monomers. We and others have proposed an alternate model in which the TNF-receptor dimer-sitting at the vertices of a large supramolecular receptor network of ligand-bound receptor trimers-undergoes a closed-to-open transition, propagated through a scissorslike conformational change in a tightly bundled transmembrane (TM) domain dimer. Here we have combined electron paramagnetic resonance spectroscopy and potential-of-mean force calculations on the isolated TM domain of the long isoform of DR5. The experiments and calculations both independently validate that the opening transition is intrinsic to the physical character of the TM domain dimer, with a significant energy barrier separating the open and closed states.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24655519      PMCID: PMC3984993          DOI: 10.1016/j.bpj.2014.01.044

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Dead-time free measurement of dipole-dipole interactions between electron spins.

Authors:  M Pannier; S Veit; A Godt; G Jeschke; H W Spiess
Journal:  J Magn Reson       Date:  2000-02       Impact factor: 2.229

2.  NMR experiments on aligned samples of membrane proteins.

Authors:  A A De Angelis; D H Jones; C V Grant; S H Park; M F Mesleh; S J Opella
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

3.  TRAIL-R2: a novel apoptosis-mediating receptor for TRAIL.

Authors:  H Walczak; M A Degli-Esposti; R S Johnson; P J Smolak; J Y Waugh; N Boiani; M S Timour; M J Gerhart; K A Schooley; C A Smith; R G Goodwin; C T Rauch
Journal:  EMBO J       Date:  1997-09-01       Impact factor: 11.598

4.  Determining the helical tilt angle of a transmembrane helix in mechanically aligned lipid bilayers using EPR spectroscopy.

Authors:  Johnson J Inbaraj; Mikhail Laryukhin; Gary A Lorigan
Journal:  J Am Chem Soc       Date:  2007-06-01       Impact factor: 15.419

5.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

6.  LOOS: an extensible platform for the structural analysis of simulations.

Authors:  Tod D Romo; Alan Grossfield
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

7.  Synthesis of TOAC spin-labeled proteins and reconstitution in lipid membranes.

Authors:  Christine B Karim; Zhiwen Zhang; David D Thomas
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

8.  Phospholamban structural dynamics in lipid bilayers probed by a spin label rigidly coupled to the peptide backbone.

Authors:  Christine B Karim; Tara L Kirby; Zhiwen Zhang; Yuri Nesmelov; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-24       Impact factor: 11.205

9.  Activation of the p75 neurotrophin receptor through conformational rearrangement of disulphide-linked receptor dimers.

Authors:  Marçal Vilar; Ioannis Charalampopoulos; Rajappa S Kenchappa; Anastasia Simi; Esra Karaca; Alessandra Reversi; Soyoung Choi; Mark Bothwell; Ismael Mingarro; Wilma J Friedman; Giampietro Schiavo; Philippe I H Bastiaens; Peter J Verveer; Bruce D Carter; Carlos F Ibáñez
Journal:  Neuron       Date:  2009-04-16       Impact factor: 17.173

10.  Actin-binding cleft closure in myosin II probed by site-directed spin labeling and pulsed EPR.

Authors:  Jennifer C Klein; Adam R Burr; Bengt Svensson; Daniel J Kennedy; John Allingham; Margaret A Titus; Ivan Rayment; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-25       Impact factor: 11.205

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  9 in total

Review 1.  Piecing it together: Unraveling the elusive structure-function relationship in single-pass membrane receptors.

Authors:  Christopher C Valley; Andrew K Lewis; Jonathan N Sachs
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-01-12       Impact factor: 3.747

2.  Noncompetitive inhibitors of TNFR1 probe conformational activation states.

Authors:  Chih Hung Lo; Tory M Schaaf; Benjamin D Grant; Colin Kin-Wye Lim; Prachi Bawaskar; Courtney C Aldrich; David D Thomas; Jonathan N Sachs
Journal:  Sci Signal       Date:  2019-07-30       Impact factor: 8.192

3.  Noncompetitive Allosteric Antagonism of Death Receptor 5 by a Synthetic Affibody Ligand.

Authors:  Nagamani Vunnam; Sophia Szymonski; Petra Hirsova; Gregory J Gores; Jonathan N Sachs; Benjamin J Hackel
Journal:  Biochemistry       Date:  2020-09-30       Impact factor: 3.162

4.  Death Receptor 5 Activation Is Energetically Coupled to Opening of the Transmembrane Domain Dimer.

Authors:  Nagamani Vunnam; Cecily Kristine Campbell-Bezat; Andrew K Lewis; Jonathan N Sachs
Journal:  Biophys J       Date:  2017-07-25       Impact factor: 4.033

5.  Death Receptor 5 Networks Require Membrane Cholesterol for Proper Structure and Function.

Authors:  Andrew K Lewis; Christopher C Valley; Stephen L Peery; Benjamin Brummel; Anthony R Braun; Christine B Karim; Jonathan N Sachs
Journal:  J Mol Biol       Date:  2016-10-06       Impact factor: 5.469

6.  Conformational states of TNFR1 as a molecular switch for receptor function.

Authors:  Chih Hung Lo; Evan C Huber; Jonathan N Sachs
Journal:  Protein Sci       Date:  2020-01-31       Impact factor: 6.725

7.  An Innovative High-Throughput Screening Approach for Discovery of Small Molecules That Inhibit TNF Receptors.

Authors:  Chih Hung Lo; Nagamani Vunnam; Andrew K Lewis; Ting-Lan Chiu; Benjamin E Brummel; Tory M Schaaf; Benjamin D Grant; Prachi Bawaskar; David D Thomas; Jonathan N Sachs
Journal:  SLAS Discov       Date:  2017-05-22       Impact factor: 3.341

8.  High-Throughput Spectral and Lifetime-Based FRET Screening in Living Cells to Identify Small-Molecule Effectors of SERCA.

Authors:  Tory M Schaaf; Kurt C Peterson; Benjamin D Grant; Prachi Bawaskar; Samantha Yuen; Ji Li; Joseph M Muretta; Gregory D Gillispie; David D Thomas
Journal:  SLAS Discov       Date:  2016-12-13       Impact factor: 3.341

9.  Human immunoglobulin G hinge regulates agonistic anti-CD40 immunostimulatory and antitumour activities through biophysical flexibility.

Authors:  Xiaobo Liu; Yingjie Zhao; Huan Shi; Yan Zhang; Xueying Yin; Mingdong Liu; Huihui Zhang; Yongning He; Boxun Lu; Tengchuan Jin; Fubin Li
Journal:  Nat Commun       Date:  2019-09-27       Impact factor: 14.919

  9 in total

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