Literature DB >> 23708257

Perspective on the Martini model.

Siewert J Marrink1, D Peter Tieleman.   

Abstract

The Martini model, a coarse-grained force field for biomolecular simulations, has found a broad range of applications since its release a decade ago. Based on a building block principle, the model combines speed and versatility while maintaining chemical specificity. Here we review the current state of the model. We describe recent highlights as well as shortcomings, and our ideas on the further development of the model.

Mesh:

Substances:

Year:  2013        PMID: 23708257     DOI: 10.1039/c3cs60093a

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  238 in total

1.  CHARMM-GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides.

Authors:  Pin-Chia Hsu; Bart M H Bruininks; Damien Jefferies; Paulo Cesar Telles de Souza; Jumin Lee; Dhilon S Patel; Siewert J Marrink; Yifei Qi; Syma Khalid; Wonpil Im
Journal:  J Comput Chem       Date:  2017-08-03       Impact factor: 3.376

2.  Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits.

Authors:  Justin Spiriti; Daniel M Zuckerman
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

Review 3.  Molecular basis of high viscosity in concentrated antibody solutions: Strategies for high concentration drug product development.

Authors:  Dheeraj S Tomar; Sandeep Kumar; Satish K Singh; Sumit Goswami; Li Li
Journal:  MAbs       Date:  2016-01-06       Impact factor: 5.857

Review 4.  Force fields for simulating the interaction of surfaces with biological molecules.

Authors:  Lewis Martin; Marcela M Bilek; Anthony S Weiss; Serdar Kuyucak
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

5.  Chloroform alters interleaflet coupling in lipid bilayers: an entropic mechanism.

Authors:  Ramon Reigada; Francesc Sagués
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 6.  Molecular dynamics simulations in photosynthesis.

Authors:  Nicoletta Liguori; Roberta Croce; Siewert J Marrink; Sebastian Thallmair
Journal:  Photosynth Res       Date:  2020-04-15       Impact factor: 3.573

7.  Molecular dynamics simulations of lipid nanodiscs.

Authors:  Mohsen Pourmousa; Richard W Pastor
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-03       Impact factor: 3.747

8.  The C-terminal Domains of Apoptotic BH3-only Proteins Mediate Their Insertion into Distinct Biological Membranes.

Authors:  Vicente Andreu-Fernández; María J García-Murria; Manuel Bañó-Polo; Juliette Martin; Luca Monticelli; Mar Orzáez; Ismael Mingarro
Journal:  J Biol Chem       Date:  2016-10-07       Impact factor: 5.157

9.  The Ebola virus protein VP40 hexamer enhances the clustering of PI(4,5)P2 lipids in the plasma membrane.

Authors:  Jeevan B Gc; Bernard S Gerstman; Robert V Stahelin; Prem P Chapagain
Journal:  Phys Chem Chem Phys       Date:  2016-10-19       Impact factor: 3.676

10.  Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes.

Authors:  Yang Liu; Jonathan Barnoud; Siewert J Marrink
Journal:  Biophys J       Date:  2019-09-06       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.