Literature DB >> 24655171

The area reactivity model of geminate recombination.

Thorsten Prüstel1, Martin Meier-Schellersheim1.   

Abstract

We investigate the reversible diffusion-influenced reaction of an isolated pair in the context of the area reactivity model that describes the reversible binding of a single molecule in the presence of a binding site in terms of a generalized version of the Feynman-Kac equation in two dimensions. We compute the corresponding exact Green's function in the Laplace domain for both the initially unbound and bound molecule. We discuss convolution relations that facilitate the calculation of the binding and survival probabilities. Furthermore, we calculate an exact analytical expression for the Green's function in the time domain by inverting the Laplace transform via the Bromwich contour integral and derive expressions for the binding and survival probability in the time domain as well. We numerically confirm the accuracy of the obtained expressions by propagating the generalized Feynman-Kac equation in the time domain. Our results should be useful for comparing the area reactivity model with the contact reactivity model.

Mesh:

Year:  2014        PMID: 24655171      PMCID: PMC3971826          DOI: 10.1063/1.4868554

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

Review 1.  Spatial organization of transmembrane receptor signalling.

Authors:  Ioanna Bethani; Sigrid S Skånland; Ivan Dikic; Amparo Acker-Palmer
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

2.  Simulating biochemical networks at the particle level and in time and space: Green's function reaction dynamics.

Authors:  Jeroen S van Zon; Pieter Rein ten Wolde
Journal:  Phys Rev Lett       Date:  2005-04-01       Impact factor: 9.161

3.  Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space.

Authors:  Jeroen S van Zon; Pieter Rein ten Wolde
Journal:  J Chem Phys       Date:  2005-12-15       Impact factor: 3.488

4.  Reversible diffusion-influenced reactions of an isolated pair on some two dimensional surfaces.

Authors:  Thorsten Prüstel; M Tachiya
Journal:  J Chem Phys       Date:  2013-11-21       Impact factor: 3.488

5.  Exact Green's function of the reversible diffusion-influenced reaction for an isolated pair in two dimensions.

Authors:  Thorsten Prüstel; Martin Meier-Schellersheim
Journal:  J Chem Phys       Date:  2012-08-07       Impact factor: 3.488

6.  Single molecule diffusion and the solution of the spherically symmetric residence time equation.

Authors:  Noam Agmon
Journal:  J Phys Chem A       Date:  2011-02-09       Impact factor: 2.781

7.  Green's function for reversible geminate reaction with volume reactivity.

Authors:  Svetlana S Khokhlova; Noam Agmon
Journal:  J Chem Phys       Date:  2012-11-14       Impact factor: 3.488

8.  Theory of reversible diffusion-influenced reactions with non-Markovian dissociation in two space dimensions.

Authors:  Thorsten Prüstel; Martin Meier-Schellersheim
Journal:  J Chem Phys       Date:  2013-03-14       Impact factor: 3.488

  8 in total
  2 in total

1.  Unified path integral approach to theories of diffusion-influenced reactions.

Authors:  Thorsten Prüstel; Martin Meier-Schellersheim
Journal:  Phys Rev E       Date:  2017-08-25       Impact factor: 2.529

2.  Rate coefficients, binding probabilities, and related quantities for area reactivity models.

Authors:  Thorsten Prüstel; Martin Meier-Schellersheim
Journal:  J Chem Phys       Date:  2014-11-21       Impact factor: 3.488

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.