Literature DB >> 28950598

Unified path integral approach to theories of diffusion-influenced reactions.

Thorsten Prüstel1, Martin Meier-Schellersheim1.   

Abstract

Building on mathematical similarities between quantum mechanics and theories of diffusion-influenced reactions, we develop a general approach for computational modeling of diffusion-influenced reactions that is capable of capturing not only the classical Smoluchowski picture but also alternative theories, as is here exemplified by a volume reactivity model. In particular, we prove the path decomposition expansion of various Green's functions describing the irreversible and reversible reaction of an isolated pair of molecules. To this end, we exploit a connection between boundary value and interaction potential problems with δ- and δ^{'}-function perturbation. We employ a known path-integral-based summation of a perturbation series to derive a number of exact identities relating propagators and survival probabilities satisfying different boundary conditions in a unified and systematic manner. Furthermore, we show how the path decomposition expansion represents the propagator as a product of three factors in the Laplace domain that correspond to quantities figuring prominently in stochastic spatially resolved simulation algorithms. This analysis will thus be useful for the interpretation of current and the design of future algorithms. Finally, we discuss the relation between the general approach and the theory of Brownian functionals and calculate the mean residence time for the case of irreversible and reversible reactions.

Entities:  

Year:  2017        PMID: 28950598      PMCID: PMC7293318          DOI: 10.1103/PhysRevE.96.022151

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  17 in total

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3.  Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space.

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4.  Reversible diffusion-influenced reactions of an isolated pair on some two dimensional surfaces.

Authors:  Thorsten Prüstel; M Tachiya
Journal:  J Chem Phys       Date:  2013-11-21       Impact factor: 3.488

5.  Exact Green's function of the reversible diffusion-influenced reaction for an isolated pair in two dimensions.

Authors:  Thorsten Prüstel; Martin Meier-Schellersheim
Journal:  J Chem Phys       Date:  2012-08-07       Impact factor: 3.488

6.  Single molecule diffusion and the solution of the spherically symmetric residence time equation.

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Journal:  J Phys Chem A       Date:  2011-02-09       Impact factor: 2.781

7.  Spatio-temporal correlations can drastically change the response of a MAPK pathway.

Authors:  Koichi Takahashi; Sorin Tanase-Nicola; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

8.  Stochastically gated local and occupation times of a Brownian particle.

Authors:  Paul C Bressloff
Journal:  Phys Rev E       Date:  2017-01-19       Impact factor: 2.529

9.  Green's function for reversible geminate reaction with volume reactivity.

Authors:  Svetlana S Khokhlova; Noam Agmon
Journal:  J Chem Phys       Date:  2012-11-14       Impact factor: 3.488

10.  Free-Propagator Reweighting Integrator for Single-Particle Dynamics in Reaction-Diffusion Models of Heterogeneous Protein-Protein Interaction Systems.

Authors:  Margaret E Johnson; Gerhard Hummer
Journal:  Phys Rev X       Date:  2014 Jul-Sep       Impact factor: 15.762

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  1 in total

1.  Space-time histories approach to fast stochastic simulation of bimolecular reactions.

Authors:  Thorsten Prüstel; Martin Meier-Schellersheim
Journal:  J Chem Phys       Date:  2021-04-28       Impact factor: 3.488

  1 in total

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