Literature DB >> 24643211

Isothermal amplified detection of DNA and RNA.

Lei Yan1, Jie Zhou, Yue Zheng, Adam S Gamson, Benjamin T Roembke, Shizuka Nakayama, Herman O Sintim.   

Abstract

This review highlights various methods that can be used for a sensitive detection of nucleic acids without using thermal cycling procedures, as is done in PCR or LCR. Topics included are nucleic acid sequence-based amplification (NASBA), strand displacement amplification (SDA), loop-mediated amplification (LAMP), Invader assay, rolling circle amplification (RCA), signal mediated amplification of RNA technology (SMART), helicase-dependent amplification (HDA), recombinase polymerase amplification (RPA), nicking endonuclease signal amplification (NESA) and nicking endonuclease assisted nanoparticle activation (NENNA), exonuclease-aided target recycling, Junction or Y-probes, split DNAZyme and deoxyribozyme amplification strategies, template-directed chemical reactions that lead to amplified signals, non-covalent DNA catalytic reactions, hybridization chain reactions (HCR) and detection via the self-assembly of DNA probes to give supramolecular structures. The majority of these isothermal amplification methods can detect DNA or RNA in complex biological matrices and have great potential for use at point-of-care.

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Year:  2014        PMID: 24643211     DOI: 10.1039/c3mb70304e

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  83 in total

Review 1.  Synthetic biology devices for in vitro and in vivo diagnostics.

Authors:  Shimyn Slomovic; Keith Pardee; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-24       Impact factor: 11.205

2.  Lack of correlation between reaction speed and analytical sensitivity in isothermal amplification reveals the value of digital methods for optimization: validation using digital real-time RT-LAMP.

Authors:  Eugenia M Khorosheva; Mikhail A Karymov; David A Selck; Rustem F Ismagilov
Journal:  Nucleic Acids Res       Date:  2015-09-10       Impact factor: 16.971

3.  Extreme PCR Meets High-Speed Melting: A Step Closer to Molecular Diagnostics "While You Wait".

Authors:  G Mike Makrigiorgos
Journal:  Clin Chem       Date:  2018-12-10       Impact factor: 8.327

4.  DNA 5-Methylcytosine-Specific Amplification and Sequencing.

Authors:  Chang Liu; Xiaolong Cui; Boxuan Simen Zhao; Pradnya Narkhede; Yawei Gao; Jun Liu; Xiaoyang Dou; Qing Dai; Li-Sheng Zhang; Chuan He
Journal:  J Am Chem Soc       Date:  2020-02-25       Impact factor: 15.419

5.  A paper/polymer hybrid CD-like microfluidic SpinChip integrated with DNA-functionalized graphene oxide nanosensors for multiplex qLAMP detection.

Authors:  Maowei Dou; Sharma T Sanjay; Delfina C Dominguez; Sihui Zhan; XiuJun Li
Journal:  Chem Commun (Camb)       Date:  2017-10-03       Impact factor: 6.222

Review 6.  Nucleic acid-based biotechnologies for food-borne pathogen detection using routine time-intensive culture-based methods and fast molecular diagnostics.

Authors:  Amira Souii; Manel Ben M'hadheb-Gharbi; Jawhar Gharbi
Journal:  Food Sci Biotechnol       Date:  2016-02-29       Impact factor: 2.391

7.  Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection.

Authors:  Mohammadali Safavieh; Manoj K Kanakasabapathy; Farhang Tarlan; Minhaz U Ahmed; Mohammed Zourob; Waseem Asghar; Hadi Shafiee
Journal:  ACS Biomater Sci Eng       Date:  2016-01-21

8.  Rapid Detection of Plasmodium knowlesi by Isothermal Recombinase Polymerase Amplification Assay.

Authors:  Meng-Yee Lai; Choo-Huck Ooi; Yee-Ling Lau
Journal:  Am J Trop Med Hyg       Date:  2017-08-18       Impact factor: 2.345

9.  Detection of nucleic acids and elimination of carryover contamination by using loop-mediated isothermal amplification and antarctic thermal sensitive uracil-DNA-glycosylase in a lateral flow biosensor: application to the detection of Streptococcus pneumoniae.

Authors:  Yi Wang; Yan Wang; Dongxun Li; Jianguo Xu; Changyun Ye
Journal:  Mikrochim Acta       Date:  2018-03-07       Impact factor: 5.833

10.  Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection.

Authors:  Alexandra East-Seletsky; Mitchell R O'Connell; Spencer C Knight; David Burstein; Jamie H D Cate; Robert Tjian; Jennifer A Doudna
Journal:  Nature       Date:  2016-09-26       Impact factor: 49.962

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