Literature DB >> 24635049

Association between foldability and aggregation propensity in small disulfide-rich proteins.

Hugo Fraga1, Ricardo Graña-Montes, Ricard Illa, Giovanni Covaleda, Salvador Ventura.   

Abstract

AIMS: Disulfide-rich domains (DRDs) are small proteins whose native structure is stabilized by the presence of covalent disulfide bonds. These domains are versatile and can perform a wide range of functions. Many of these domains readily unfold on disulfide bond reduction, suggesting that in the absence of covalent bonding they might display significant disorder.
RESULTS: Here, we analyzed the degree of disorder in 97 domains representative of the different DRDs families and demonstrate that, in terms of sequence, many of them can be classified as intrinsically disordered proteins (IDPs) or contain predicted disordered regions. The analysis of the aggregation propensity of these domains indicates that, similar to IDPs, their sequences are more soluble and have less aggregating regions than those of other globular domains, suggesting that they might have evolved to avoid aggregation after protein synthesis and before they can attain its compact and covalently linked native structure. INNOVATION AND
CONCLUSION: DRDs, which resemble IDPs in the reduced state and become globular when their disulfide bonds are formed, illustrate the link between protein folding and aggregation propensities and how these two properties cannot be easily dissociated, determining the main traits of the folding routes followed by these small proteins to attain their native oxidized states.

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Year:  2014        PMID: 24635049      PMCID: PMC4076991          DOI: 10.1089/ars.2013.5543

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  81 in total

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2.  Crystal structure of novel metallocarboxypeptidase inhibitor from marine mollusk Nerita versicolor in complex with human carboxypeptidase A4.

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Authors:  Magdalena I Ivanova; Michael J Thompson; David Eisenberg
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6.  Folding, misfolding, and amyloid protofibril formation of WW domain FBP28.

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Review 8.  Intrinsically disordered proteins: from sequence and conformational properties toward drug discovery.

Authors:  Nasrollah Rezaei-Ghaleh; Martin Blackledge; Markus Zweckstetter
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9.  Contribution of disulfide bonds to stability, folding, and amyloid fibril formation: the PI3-SH3 domain case.

Authors:  Ricardo Graña-Montes; Natalia S de Groot; Virginia Castillo; Javier Sancho; Adrian Velazquez-Campoy; Salvador Ventura
Journal:  Antioxid Redox Signal       Date:  2011-09-15       Impact factor: 8.401

10.  Structural classification of small, disulfide-rich protein domains.

Authors:  Sara Cheek; S Sri Krishna; Nick V Grishin
Journal:  J Mol Biol       Date:  2006-03-29       Impact factor: 5.469

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5.  A systematic structural comparison of all solved small proteins deposited in PDB. The effect of disulfide bonds in protein fold.

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