Literature DB >> 24633792

Automated segmentation of the first mitotic spindle in differential interference contrast microcopy images of C. elegans embryos.

Reza Farhadifar1, Daniel Needleman.   

Abstract

Differential interference contrast (DIC) microscopy is a non-fluorescent microscopy technique that is commonly used to visualize the first mitotic spindle in C. elegans embryos. DIC movies are easy to acquire and provide data with high spatial and temporal resolution, allowing detailed investigations of the dynamics of the spindle-which elongates, oscillates, and is positioned asymmetrically. Despite the immense amount of information such movies provide, they are normally only used to draw qualitative conclusion based on manual inspection. We have developed an algorithm to automatically segment the mitotic spindle in DIC movies of C. elegans embryos, determine the position of centrosomes, quantify the morphology and motions of the spindle, and track these features over time. This method should be widely useful for studying the first mitotic spindle in C. elegans.

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Mesh:

Year:  2014        PMID: 24633792     DOI: 10.1007/978-1-4939-0329-0_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Evolutionary cell biology: two origins, one objective.

Authors:  Michael Lynch; Mark C Field; Holly V Goodson; Harmit S Malik; José B Pereira-Leal; David S Roos; Aaron P Turkewitz; Shelley Sazer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

2.  Use of imaging software for assessment of the associations among zona pellucida thickness variation, assisted hatching, and implantation of day 3 embryos.

Authors:  Erin I Lewis; Reza Farhadifar; Leslie V Farland; Daniel J Needleman; Stacey A Missmer; Catherine Racowsky
Journal:  J Assist Reprod Genet       Date:  2017-07-06       Impact factor: 3.412

3.  Mutation Is a Sufficient and Robust Predictor of Genetic Variation for Mitotic Spindle Traits in Caenorhabditis elegans.

Authors:  Reza Farhadifar; José Miguel Ponciano; Erik C Andersen; Daniel J Needleman; Charles F Baer
Journal:  Genetics       Date:  2016-06-22       Impact factor: 4.562

4.  Quantifying Intracellular Particle Flows by DIC Object Tracking.

Authors:  Anushree R Chaphalkar; Yash K Jawale; Dhruv Khatri; Chaitanya A Athale
Journal:  Biophys J       Date:  2021-01-11       Impact factor: 4.033

5.  Evolution of mitotic spindle behavior during the first asymmetric embryonic division of nematodes.

Authors:  Aurore-Cécile Valfort; Caroline Launay; Marie Sémon; Marie Delattre
Journal:  PLoS Biol       Date:  2018-01-22       Impact factor: 8.029

6.  Stoichiometric interactions explain spindle dynamics and scaling across 100 million years of nematode evolution.

Authors:  Che-Hang Yu; Gunar Fabig; Reza Farhadifar; Hai-Yin Wu; David B Stein; Matthew Rockman; Thomas Müller-Reichert; Michael J Shelley; Daniel J Needleman
Journal:  Elife       Date:  2020-09-23       Impact factor: 8.140

  6 in total

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