Literature DB >> 24615221

Dependence of DNA condensation on the correlation distance between condensed counterions.

Yanhui Liu1, Wenbo Wang, Lin Hu.   

Abstract

Based on the ground state of counterions condensed on a DNA molecule, a model has been developed to successfully detect the process of DNA condensation. Through further investigation, the process of DNA condensation strongly depends on the correlation distance between condensed counterions on DNA molecules. Generally, there are two routes. The process of DNA condensation with the correlation distance between condensed counterions being 2 nm or 4 nm is different from the one with the correlation distance between condensed counterions being 3 nm or 5 nm. Effects of ionic strength on the diameter of toroidal condensates originate from the increase of correlation distance between condensed counterions.

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Year:  2012        PMID: 24615221      PMCID: PMC3473126          DOI: 10.1007/s10867-012-9273-9

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  13 in total

1.  Controlling the size of nanoscale toroidal DNA condensates with static curvature and ionic strength.

Authors:  Christine C Conwell; Igor D Vilfan; Nicholas V Hud
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-18       Impact factor: 11.205

2.  Langevin dynamics of semiflexible polyelectrolytes: rod-toroid-globule-coil structures and counterion distribution.

Authors:  Zhaoyang Ou; M Muthukumar
Journal:  J Chem Phys       Date:  2005-08-15       Impact factor: 3.488

Review 3.  Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size.

Authors:  Nicholas V Hud; Igor D Vilfan
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

4.  Compaction dynamics of single DNA molecules under tension.

Authors:  Wen-Bo Fu; Xiao-Ling Wang; Xing-Hua Zhang; Shi-Yong Ran; Jie Yan; Ming Li
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

5.  Role of tension and twist in single-molecule DNA condensation.

Authors:  K Besteman; S Hage; N H Dekker; S G Lemay
Journal:  Phys Rev Lett       Date:  2007-01-30       Impact factor: 9.161

6.  Molecular dynamics simulation of multivalent-ion mediated attraction between DNA molecules.

Authors:  Liang Dai; Yuguang Mu; Lars Nordenskiöld; Johan R C van der Maarel
Journal:  Phys Rev Lett       Date:  2008-03-18       Impact factor: 9.161

Review 7.  DNA condensation.

Authors:  V A Bloomfield
Journal:  Curr Opin Struct Biol       Date:  1996-06       Impact factor: 6.809

Review 8.  DNA condensation by multivalent cations.

Authors:  V A Bloomfield
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

9.  Stretching of single collapsed DNA molecules.

Authors:  C G Baumann; V A Bloomfield; S B Smith; C Bustamante; M D Wang; S M Block
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

10.  Small anion with higher valency retards the compaction of DNA in the presence of multivalent cation.

Authors:  Takuya Saito; Takafumi Iwaki; Kenichi Yoshikawa
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

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