| Literature DB >> 24567742 |
Guillaume Besnard1, Jérémy Dupuy1, Maximilien Larter2, Peter Cuneo3, David Cooke4, Lounes Chikhi5.
Abstract
Humans have introduced plants and animals into new continents and islands with negative effects on local species. This has been the case of the olive that was introduced in Australia, New Zealand and Pacific islands where it became invasive. Two subspecies were introduced in Australia, and each successfully invaded a specific area: the African olive in New South Wales (NSW) and the Mediterranean olive in South Australia. Here, we examine their origins and spread and analyse a large sample of native and invasive accessions with chloroplast and nuclear microsatellites. African olive populations from the invaded range exhibit two South African chlorotypes hence supporting an introduction from South Africa, while populations from South Australia exhibit chlorotypes of Mediterranean cultivars. Congruently, nuclear markers support the occurrence of two lineages in Australia but demonstrate that admixture took place, attesting that they hybridized early after introduction. Furthermore, using an approximate Bayesian computation framework, we found strong support for the serial introduction of the African olive from South Africa to NSW and then from NSW to Hawaii. The taxon experienced successive bottlenecks that did not preclude invasion, meaning that rapid decisions need to be taken to avoid naturalization where it has not established a large population yet.Entities:
Keywords: Olea europaea; admixture; approximate Bayesian computation; biologic invasion; cuspidata; introgression; microsatellites; plastid DNA
Year: 2013 PMID: 24567742 PMCID: PMC3927883 DOI: 10.1111/eva.12110
Source DB: PubMed Journal: Evol Appl ISSN: 1752-4571 Impact factor: 5.183
Figure 1Geographical locations of the ten populations sampled in Australia and detected chlorotypes form the whole invasive range. A = Lonsdale, B = Shepherds Hill, C = Brownhill Creek, D = Camden Park, E = Mount Annan, F = Bringelly, G = Luddenham, H = Maitland Park, I = Harpers Hill and J = Ravensworth. The frequency of chlorotypes found at each location is indicated. Size of pie charts is proportional to the number of individuals analysed.
Mean, median, mode and quantiles for demographic parameters and mutation rate under scenario 1. These results were obtained with DiyABC version 2.0 (Cornuet et al. submitted). Q2.5% and Q97.5% are the 2.5% and 97.5% quantile values, respectively. All values were estimated from 500 000 and 5000 simulated data for priors and posteriors, respectively. Modes were not given for Ne1, Ne2, Ne3, N1, N2 and mu because their prior distributions were uniform.
| Parameter | Mean | Median | Mode | Q2.5% | Q97.5% |
|---|---|---|---|---|---|
| Ne1 | |||||
| Prior | 54 994 | 55 017 | – | 12 248 | 97 754 |
| Posterior | 18 390 | 16 380 | 11 857 | 10 256 | 37 591 |
| Ne2 | |||||
| Prior | 54 988 | 54 963 | – | 12 255 | 97 778 |
| Posterior | 59 870 | 57 880 | 83 290 | 12 728 | 98 262 |
| Ne3 | |||||
| Prior | 54 985 | 55 007 | – | 12 230 | 97 771 |
| Posterior | 51 500 | 49 470 | 18 751 | 11 634 | 97 549 |
| N1 | |||||
| Prior | 26 | 26 | – | 3 | 49 |
| Posterior | 24.6 | 23.9 | 23.7 | 4.93 | 47.05 |
| N2 | |||||
| Prior | 26 | 26 | – | 3 | 49 |
| Posterior | 12.1 | 9.8 | 5.26 | 2.38 | 36.76 |
| db1 | |||||
| Prior | 16 | 16 | 4 | 1 | 35 |
| Posterior | 7.7 | 6.9 | 5.53 | 1.43 | 19.9 |
| db2 | |||||
| Prior | 11 | 9 | 1 | 1 | 29 |
| Posterior | 13.8 | 13.3 | 11.96 | 3.1 | 27.4 |
| K1 | |||||
| Prior | 3.45 | 1.52 | 0.99 | 0.15 | 21.5 |
| Posterior | 3.55 | 3.33 | 3.10 | 1.54 | 6.59 |
| K2 | |||||
| Priors | 5.37 | 2.58 | 1.01 | 0.23 | 33 |
| Posterior | 0.98 | 0.77 | 0.59 | 0.34 | 2.46 |
| T1 | |||||
| Prior | 33 | 34 | 40 | 17 | 40 |
| Posterior | 35.5 | 36.6 | 39.2 | 23.9 | 40 |
| T2 | |||||
| Prior | 22 | 22 | 23 | 5 | 37 |
| Posterior | 20.2 | 20 | 19.8 | 7.7 | 33.1 |
| mu | |||||
| Prior | 5e-04 | 5.5e-04 | – | 1.2e-04 | 9.8e-04 |
| Posterior | 3.8e-04 | 3.6e-04 | 3.2e-04 | 1.3e-04 | 7.5e-04 |
Ne1, Ne2 and Ne3 = population effective sizes (number of individuals) for South African, NSW and Hawaiian populations, respectively; N1 and N2 = number of founders for the first and second colonization events (in NSW and then Hawaii); db1 and db2 = duration of the initial bottleneck after introduction in NSW and Hawaii (number of generations), respectively; K1 and K2 = intensity of the bottleneck in NSW and Hawaii, respectively; T1 and T2 = introduction times for the two colonization events (number of generations); mu = SSR mutation rate per locus and by geneation.
Figure 2Reduced median network (Bandelt et al. 1999) of the 21 chlorotypes detected in the African range of subsp. cuspidata (lineage A; Besnard et al. 2007b). Each chlorotype is represented by a dot, whose width is proportional to the number of occurrences in our sample. See Table S3 for chlorotype profiles and geographic origins. The length of branches is proportional to the number of mutational steps. The missing, intermediate nodes are indicated by small black points. For each chlorotype, the country of origin is indicated by a specific colour. The two African chlorotypes detected in NSW are indicated in red (A.1 and A.2; both were detected in the population of Cape Town, South Africa).
Figure 3Inference of population structure in native and invasive olive accessions based on 11 nuclear SSRs and using Bayesian simulations with Structure (Pritchard et al. 2000). (A) Absolute values of the second-order rate of change of the likelihood distribution divided by the s.d. of the likelihoods (ΔK) for each K value; (B) Mean log likelihood [Ln(K) ± SD] averaged over the ten iterations for each K value; (C) Barplot of the Structure analysis based on the best two K values (i.e. 2 and 5) according to Ln(K) and ΔK criteria (Evanno et al. 2005). The percentage of assignment of each individual to the clusters averaged over ten iterations is shown. Each vertical bar represents an individual. The chloroplast lineages match with the two clusters defined on nuclear SSRs except for admixed individuals (*indicate Mt Annan no 17 and Bringelly no 21). At K = 2, clusters E and C reflect the strong genetic differentiation between subspecies europaea and cuspidata, respectively. At K = 5, native and invasive Mediterranean olives are mostly assigned to clusters EN and EI, respectively. Similarly, African olive individuals from South Africa, NSW and Hawaii are mostly assigned to three distinct clusters, namely CSA, CNSW and CH.
Allele size range (in bp), number of alleles (Na), allelic richness (RS for 20 individuals), observed heterozygosity (HO), total diversity (HS) for each nuclear SSR locus for native and invasive trees of subspp. europaea (Mediterranean olive) and cuspidata (African olive).
| Mediterranean cultivars (native | South Australia | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Allele size range | Allele size range | ||||||||
| DCA1 | 208–272 | 12 | 6.48 | 0.75 | 0.64 | 208–278 | 8 | 5.67 | 0.78 | 0.74 |
| DCA3 | 233–257 | 11 | 8.14 | 0.93 | 0.86 | 235–255 | 7 | 5.69 | 0.78 | 0.76 |
| DCA5 | 195–215 | 9 | 6.95 | 0.46 | 0.47 | 195–209 | 8 | 6.72 | 0.77 | 0.76 |
| DCA8 | 127–159 | 14 | 9.77 | 0.93 | 0.83 | 127–153 | 11 | 9.56 | 0.85 | 0.88 |
| DCA9 | 163–209 | 16 | 11.13 | 0.88 | 0.85 | 163–213 | 14 | 10.06 | 0.85 | 0.87 |
| DCA14 | 170–190 | 12 | 7.89 | 0.81 | 0.69 | 149–190 | 9 | 6.25 | 0.76 | 0.70 |
| DCA15 | 247–271 | 7 | 4.76 | 0.77 | 0.65 | 247–271 | 5 | 4.44 | 0.71 | 0.72 |
| DCA18 | 162–186 | 12 | 9.31 | 0.91 | 0.86 | 168–184 | 8 | 7.42 | 0.77 | 0.84 |
| EMO3 | 213–226 | 10 | 7.92 | 0.93 | 0.81 | 213–226 | 8 | 6.55 | 0.79 | 0.82 |
| GAPU71A | 211–243 | 9 | 5.35 | 0.53 | 0.47 | 211–233 | 6 | 4.93 | 0.62 | 0.61 |
| PA(ATT)2 | 106–124 | 6 | 5.29 | 0.82 | 0.77 | 106–124 | 6 | 5.87 | 0.77 | 0.78 |
| Average | – | 11.1 | 7.82 | 0.80 | 0.73 | – | 8.5 | 6.87 | 0.77 | 0.78 |
| Cape Town (native | New South Wales | |||||||||
| Locus | Allele size range | Allele size range | ||||||||
| DCA1 | 214–278 | 20 | 20.00 | 0.90 | 0.95 | 214–260 | 8 | 6.52 | 0.77 | 0.77 |
| DCA3 | 231–281 | 13 | 13.00 | 0.75 | 0.74 | 233–237 | 2 | 2.00 | 0.24 | 0.34 |
| DCA5 | 196–202 | 3 | 3.00 | 0.40 | 0.48 | 200–202 | 2 | 2.00 | 0.33 | 0.32 |
| DCA8 | 119–181 | 21 | 21.00 | 0.95 | 0.94 | 123–143 | 11 | 4.97 | 0.44 | 0.44 |
| DCA9 | 167–215 | 12 | 12.00 | 0.80 | 0.83 | 167–237 | 14 | 10.35 | 0.80 | 0.87 |
| DCA14 | 146–152 | 7 | 7.00 | 0.75 | 0.79 | 145–150 | 6 | 4.97 | 0.75 | 0.68 |
| DCA15 | 247 | 1 | 1.00 | – | – | 247 | 1 | 1.00 | – | – |
| DCA18 | 160–260 | 21 | 21.00 | 0.80 | 0.96 | 164–220 | 16 | 10.10 | 0.78 | 0.86 |
| EMO3 | 200–219 | 14 | 14.00 | 0.90 | 0.93 | 207–213 | 5 | 4.48 | 0.60 | 0.67 |
| GAPU71A | 209–255 | 14 | 14.00 | 0.90 | 0.93 | 213–249 | 9 | 6.87 | 0.74 | 0.76 |
| PA(ATT)2 | 100–118 | 5 | 5.00 | 0.40 | 0.39 | 100–118 | 4 | 3.00 | 0.46 | 0.45 |
| Average | – | 13.0 | 13.00 | 0.76 | 0.79 | – | 7.7 | 5.53 | 0.59 | 0.62 |
Excluding admixed individuals.
DCA15 was not considered to compute average values because not variable in subsp. cuspidata.
The FIS value was significantly different from 0 only for cultivars (FIS = −0.103; CI 95% = [−0.140 to −0.081]), for which the value was significantly negative. This result indicates heterozygous excess, probably due to human selection of early-generation admixed genotypes, maintained by clonal growth over long period of times.
Figure 4Prior and posterior density curves for all demographic parameters. All posterior and prior densities were computed with DiyABC version 2.0 (Cornuet et al. submitted) and were estimated from 500 000 and 5000 samples, respectively (i.e. the best 1% of the 500 000 simulated data). A. Effective numbers of founding individuals in the invasive range (N1 and N2); B. Effective population size in number of individuals in both native (Ne1) and invasive (Ne2 and Ne3) ranges; (C) Latency phase after introduction in the invasive range (db1 and db2; in number of generations); (D) Number of generations since introduction to NSW, Australia (T1), and since second introduction to Maui, Hawaii (T2); E. Severity of the bottleneck during the first and the second events of introduction (K1 and K2).