Literature DB >> 24561830

ISWI chromatin remodeling: one primary actor or a coordinated effort?

Blaine Bartholomew1.   

Abstract

The ISWI family of ATP-dependent chromatin remodelers regulates transcription of coding and noncoding RNA by mobilizing nucleosomes and controlling the length of linker DNA separating nucleosomes (spacing). Nucleosome movement is tightly coupled to the DNA translocation activity of the helicase domain in the catalytic subunit. There may be other domains besides the helicase domain needed to move DNA in and out of nucleosomes. The C terminus of the ISWI catalytic subunit with the conserved HAND, SANT, and SLIDE domains may be involved in nucleosome spacing. There are several models of how the C terminus may facilitate in ISWI remodeling such as regulating the activity of the helicase domain and causing the helicase domain to translocate more efficiently on DNA or to enhance its selectivity for nucleosomes. Another possibility is that domains like SLIDE promote linker DNA entering into nucleosomes in a coordinated manner with the helicase domain.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24561830      PMCID: PMC4332870          DOI: 10.1016/j.sbi.2014.01.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  44 in total

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Journal:  Mol Cell Biol       Date:  2012-07-02       Impact factor: 4.272

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Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

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Journal:  FEBS J       Date:  2011-09-02       Impact factor: 5.542

5.  The ATPase domain of ISWI is an autonomous nucleosome remodeling machine.

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Journal:  Nat Struct Mol Biol       Date:  2012-12-02       Impact factor: 15.369

6.  Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF.

Authors:  Sharon E Torigoe; Debra L Urwin; Haruhiko Ishii; Douglas E Smith; James T Kadonaga
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Review 2.  Polycomb and trithorax opposition in development and disease.

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Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2016-09-01       Impact factor: 5.814

Review 3.  The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles.

Authors:  Dongjie Li; Jie Liu; Wu Liu; Guang Li; Zhongnan Yang; Peng Qin; Lin Xu
Journal:  Chromosoma       Date:  2017-02-17       Impact factor: 4.316

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5.  A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding.

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Review 6.  Epigenetic Regulation by ATP-Dependent Chromatin-Remodeling Enzymes: SNF-ing Out Crosstalk.

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Journal:  Curr Top Dev Biol       Date:  2016-01-07       Impact factor: 4.897

7.  Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes.

Authors:  Nazar Mashtalir; Andrew R D'Avino; Brittany C Michel; Jie Luo; Joshua Pan; Jordan E Otto; Hayley J Zullow; Zachary M McKenzie; Rachel L Kubiak; Roodolph St Pierre; Alfredo M Valencia; Steven J Poynter; Seth H Cassel; Jeffrey A Ranish; Cigall Kadoch
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Review 10.  On the role of inter-nucleosomal interactions and intrinsic nucleosome dynamics in chromatin function.

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