Literature DB >> 22735386

Formation of nuclear heterochromatin: the nucleolar point of view.

Claudio Guetg1, Raffaella Santoro.   

Abstract

Establishment and inheritance of heterochromatic states is critical in maintaining genome integrity and gene expression state. The elucidation of the mechanisms implicated in these processes is fundamental to understand the control of epigenetic regulation of the genome. Recently, the nucleolus emerged as an important component of the nuclear architecture. Although the nucleolus is the most active site of cellular transcription, it is also an attractive compartment for nuclear heterochromatic regions, such as pericentric repeats, inactive X chromosome and regions with low gene density significantly enriched in repressed genes. The coexistence of euchromatic and heterochromatic rRNA genes in each cell reflects these two opposite functions of the nucleolus. An epigenetic network that is controlled by NoRC complex establishes and maintains rDNA heterochromatin. It is here discussed how heterochromatic rRNA genes and the associated epigenetic regulatory activities might mediate formation and inheritance of nuclear heterochromatic regions. Finally, we propose that the analysis of the components of heterochromatic rRNA genes will be not only relevant to understand the general composition of heterochromatin but has the potential to provide important and novel insights of how nuclear heterochromatic structures are established and inherited.

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Year:  2012        PMID: 22735386      PMCID: PMC3427276          DOI: 10.4161/epi.21072

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  32 in total

Review 1.  The multifunctional nucleolus.

Authors:  François-Michel Boisvert; Silvana van Koningsbruggen; Joaquín Navascués; Angus I Lamond
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

2.  Ribosomal DNA contributes to global chromatin regulation.

Authors:  Silvana Paredes; Keith A Maggert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

Review 3.  The PARP side of the nucleus: molecular actions, physiological outcomes, and clinical targets.

Authors:  Raga Krishnakumar; W Lee Kraus
Journal:  Mol Cell       Date:  2010-07-09       Impact factor: 17.970

4.  The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats.

Authors:  Claudio Guetg; Philipp Lienemann; Valentina Sirri; Ingrid Grummt; Danièle Hernandez-Verdun; Michael O Hottiger; Martin Fussenegger; Raffaella Santoro
Journal:  EMBO J       Date:  2010-02-18       Impact factor: 11.598

5.  Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules.

Authors:  Katharina Merz; Maria Hondele; Hannah Goetze; Katharina Gmelch; Ulrike Stoeckl; Joachim Griesenbeck
Journal:  Genes Dev       Date:  2008-05-01       Impact factor: 11.361

6.  Delocalization of nucleolar poly(ADP-ribose) polymerase-1 to the nucleoplasm and its novel link to cellular sensitivity to DNA damage.

Authors:  Ann Rancourt; Masahiko S Satoh
Journal:  DNA Repair (Amst)       Date:  2009-01-13

7.  Initial genomics of the human nucleolus.

Authors:  Attila Németh; Ana Conesa; Javier Santoyo-Lopez; Ignacio Medina; David Montaner; Bálint Péterfia; Irina Solovei; Thomas Cremer; Joaquin Dopazo; Gernot Längst
Journal:  PLoS Genet       Date:  2010-03-26       Impact factor: 5.917

8.  High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli.

Authors:  Silvana van Koningsbruggen; Marek Gierlinski; Pietá Schofield; David Martin; Geoffey J Barton; Yavuz Ariyurek; Johan T den Dunnen; Angus I Lamond
Journal:  Mol Biol Cell       Date:  2010-09-08       Impact factor: 4.138

Review 9.  Toward a unified nomenclature for mammalian ADP-ribosyltransferases.

Authors:  Michael O Hottiger; Paul O Hassa; Bernhard Lüscher; Herwig Schüler; Friedrich Koch-Nolte
Journal:  Trends Biochem Sci       Date:  2010-01-26       Impact factor: 13.807

10.  Role for perinuclear chromosome tethering in maintenance of genome stability.

Authors:  Karim Mekhail; Jan Seebacher; Steven P Gygi; Danesh Moazed
Journal:  Nature       Date:  2008-11-09       Impact factor: 49.962

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  41 in total

1.  Nuclear microbiology--bacterial assault on the nucleolus.

Authors:  Hélène Bierne
Journal:  EMBO Rep       Date:  2013-07-16       Impact factor: 8.807

2.  Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment.

Authors:  Lukasz P Slomnicki; Agata Malinowska; Michal Kistowski; Antoni Palusinski; Jing-Juan Zheng; Mari Sepp; Tonis Timmusk; Michal Dadlez; Michal Hetman
Journal:  Mol Cell Proteomics       Date:  2016-04-06       Impact factor: 5.911

Review 3.  ISWI chromatin remodeling: one primary actor or a coordinated effort?

Authors:  Blaine Bartholomew
Journal:  Curr Opin Struct Biol       Date:  2014-02-19       Impact factor: 6.809

4.  Relationship between epigenetic marks and the behavior of 45S rDNA sites in chromosomes and interphase nuclei of Lolium-Festuca complex.

Authors:  Marco Tulio Mendes Ferreira; Laiane Corsini Rocha; Matheus Braga Zanon Vitoriano; Andréa Mittelmann; Vânia Helena Techio
Journal:  Mol Biol Rep       Date:  2018-08-18       Impact factor: 2.316

5.  Linker histone variant H1T targets rDNA repeats.

Authors:  Ruiko Tani; Koji Hayakawa; Satoshi Tanaka; Kunio Shiota
Journal:  Epigenetics       Date:  2016-03-28       Impact factor: 4.528

6.  Loss of nucleolar histone chaperone NPM1 triggers rearrangement of heterochromatin and synergizes with a deficiency in DNA methyltransferase DNMT3A to drive ribosomal DNA transcription.

Authors:  Karl Holmberg Olausson; Monica Nistér; Mikael S Lindström
Journal:  J Biol Chem       Date:  2014-10-27       Impact factor: 5.157

Review 7.  Nucleolus and rRNA Gene Chromatin in Early Embryo Development.

Authors:  Jelena Kresoja-Rakic; Raffaella Santoro
Journal:  Trends Genet       Date:  2019-07-18       Impact factor: 11.639

Review 8.  Are all repeats created equal? Understanding DNA repeats at an individual level.

Authors:  Jinpu Yang; Fei Li
Journal:  Curr Genet       Date:  2016-06-03       Impact factor: 3.886

Review 9.  Nuclear architecture as an intrinsic regulator of Drosophila female germline stem cell maintenance.

Authors:  Tingting Duan; Nicole Green; Tina L Tootle; Pamela K Geyer
Journal:  Curr Opin Insect Sci       Date:  2020-01-30       Impact factor: 5.186

10.  A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity.

Authors:  Michelle Percharde; Chih-Jen Lin; Yafei Yin; Juan Guan; Gabriel A Peixoto; Aydan Bulut-Karslioglu; Steffen Biechele; Bo Huang; Xiaohua Shen; Miguel Ramalho-Santos
Journal:  Cell       Date:  2018-06-21       Impact factor: 41.582

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