Literature DB >> 24549745

Distinct bacterial communities dominate tropical and temperate zone leaf litter.

Mincheol Kim1, Woo-Sung Kim, Binu M Tripathi, Jonathan Adams.   

Abstract

Little is known of the bacterial community of tropical rainforest leaf litter and how it might differ from temperate forest leaf litter and from the soils underneath. We sampled leaf litter in a similarly advanced stage of decay, and for comparison, we also sampled the surface layer of soil, at three tropical forest sites in Malaysia and four temperate forest sites in South Korea. Illumina sequencing targeting partial bacterial 16S ribosomal ribonucleic acid (rRNA) gene revealed that the bacterial community composition of both temperate and tropical litter is quite distinct from the soils underneath. Litter in both temperate and tropical forest was dominated by Proteobacteria and Actinobacteria, while soil is dominated by Acidobacteria and, to a lesser extent, Proteobacteria. However, bacterial communities of temperate and tropical litter clustered separately from one another on an ordination. The soil bacterial community structures were also distinctive to each climatic zone, suggesting that there must be a climate-specific biogeographical pattern in bacterial community composition. The differences were also found in the level of diversity. The temperate litter has a higher operational taxonomic unit (OTU) diversity than the tropical litter, paralleling the trend in soil diversity. Overall, it is striking that the difference in community composition between the leaf litter and the soil a few centimeters underneath is about the same as that between leaf litter in tropical and temperate climates, thousands of kilometers apart. However, one substantial difference was that the leaf litter of two tropical forest sites, Meranti and Forest Research Institute Malaysia (FRIM), was overwhelmingly dominated by the single genus Burkholderia, at 37 and 23 % of reads, respectively. The 454 sequencing result showed that most Burkholderia species in tropical leaf litter belong to nonpathogenic "plant beneficial" lineages. The differences from the temperate zone in the bacterial community of tropical forest litter may be partly a product of its differing chemistry, although the unvarying climate might also play a role, as might interactions with other organisms such as fungi. The single genus Burkholderia may be seen as potentially playing a major role in decomposition and nutrient cycling in tropical forests, but apparently not in temperate forests.

Mesh:

Substances:

Year:  2014        PMID: 24549745     DOI: 10.1007/s00248-014-0380-y

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  37 in total

1.  Fungal community composition in neotropical rain forests: the influence of tree diversity and precipitation.

Authors:  Krista L McGuire; Noah Fierer; Carling Bateman; Kathleen K Treseder; Benjamin L Turner
Journal:  Microb Ecol       Date:  2011-11-12       Impact factor: 4.552

Review 2.  Legume-nodulating betaproteobacteria: diversity, host range, and future prospects.

Authors:  Prasad Gyaneshwar; Ann M Hirsch; Lionel Moulin; Wen-Ming Chen; Geoffrey N Elliott; Cyril Bontemps; Paulina Estrada-de Los Santos; Eduardo Gross; Fabio Bueno Dos Reis; Janet I Sprent; J Peter W Young; Euan K James
Journal:  Mol Plant Microbe Interact       Date:  2011-11       Impact factor: 4.171

3.  Global negative vegetation feedback to climate warming responses of leaf litter decomposition rates in cold biomes.

Authors:  Johannes H C Cornelissen; Peter M van Bodegom; Rien Aerts; Terry V Callaghan; Richard S P van Logtestijn; Juha Alatalo; F Stuart Chapin; Renato Gerdol; Jon Gudmundsson; Dylan Gwynn-Jones; Anne E Hartley; David S Hik; Annika Hofgaard; Ingibjörg S Jónsdóttir; Staffan Karlsson; Julia A Klein; Jim Laundre; Borgthor Magnusson; Anders Michelsen; Ulf Molau; Vladimir G Onipchenko; Helen M Quested; Sylvi M Sandvik; Inger K Schmidt; Gus R Shaver; Bjørn Solheim; Nadejda A Soudzilovskaia; Anna Stenström; Anne Tolvanen; Ørjan Totland; Naoya Wada; Jeffrey M Welker; Xinquan Zhao
Journal:  Ecol Lett       Date:  2007-07       Impact factor: 9.492

4.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

5.  Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils.

Authors:  Suman R Rawat; Minna K Männistö; Yana Bromberg; Max M Häggblom
Journal:  FEMS Microbiol Ecol       Date:  2012-04-30       Impact factor: 4.194

6.  Burkholderia terrae sp. nov., isolated from a forest soil.

Authors:  Hee-Chan Yang; Wan-Taek Im; Kwang Kyu Kim; Dong-Shan An; Sung-Taik Lee
Journal:  Int J Syst Evol Microbiol       Date:  2006-02       Impact factor: 2.747

7.  Metabolic responses of novel cellulolytic and saccharolytic agricultural soil Bacteria to oxygen.

Authors:  Stefanie Schellenberger; Steffen Kolb; Harold L Drake
Journal:  Environ Microbiol       Date:  2009-12-27       Impact factor: 5.491

8.  Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia.

Authors:  Wen-Ming Chen; Sergio M de Faria; Jui-Hsing Chou; Euan K James; Geoffrey N Elliott; Janet I Sprent; Cyril Bontemps; J Peter W Young; Peter Vandamme
Journal:  Int J Syst Evol Microbiol       Date:  2008-09       Impact factor: 2.747

9.  Phylogenetic analysis of burkholderia species by multilocus sequence analysis.

Authors:  Paulina Estrada-de los Santos; Pablo Vinuesa; Lourdes Martínez-Aguilar; Ann M Hirsch; Jesús Caballero-Mellado
Journal:  Curr Microbiol       Date:  2013-02-13       Impact factor: 2.188

10.  Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions.

Authors:  Thomas Schneider; Katharina M Keiblinger; Emanuel Schmid; Katja Sterflinger-Gleixner; Günther Ellersdorfer; Bernd Roschitzki; Andreas Richter; Leo Eberl; Sophie Zechmeister-Boltenstern; Kathrin Riedel
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

View more
  13 in total

1.  Influence of substrate type on microbial community structure in vertical-flow constructed wetland treating polluted river water.

Authors:  Wei Guan; Min Yin; Tao He; Shuguang Xie
Journal:  Environ Sci Pollut Res Int       Date:  2015-08-13       Impact factor: 4.223

Review 2.  Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change.

Authors:  Salvador Lladó; Rubén López-Mondéjar; Petr Baldrian
Journal:  Microbiol Mol Biol Rev       Date:  2017-04-12       Impact factor: 11.056

3.  Changes in Soil Fungal Community Structure with Increasing Disturbance Frequency.

Authors:  Hyunjun Cho; Mincheol Kim; Binu Tripathi; Jonathan Adams
Journal:  Microb Ecol       Date:  2017-01-06       Impact factor: 4.552

Review 4.  Patterns of Bird-Bacteria Associations.

Authors:  Deanna M Chung; Elise Ferree; Dawn M Simon; Pamela J Yeh
Journal:  Ecohealth       Date:  2018-06-12       Impact factor: 3.184

Review 5.  Evolution and Ecology of Actinobacteria and Their Bioenergy Applications.

Authors:  Gina R Lewin; Camila Carlos; Marc G Chevrette; Heidi A Horn; Bradon R McDonald; Robert J Stankey; Brian G Fox; Cameron R Currie
Journal:  Annu Rev Microbiol       Date:  2016-09-08       Impact factor: 15.500

6.  Temporal variation overshadows the response of leaf litter microbial communities to simulated global change.

Authors:  Kristin L Matulich; Claudia Weihe; Steven D Allison; Anthony S Amend; Renaud Berlemont; Michael L Goulden; Sarah Kimball; Adam C Martiny; Jennifer B H Martiny
Journal:  ISME J       Date:  2015-05-15       Impact factor: 11.217

7.  Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil.

Authors:  Vincent Tardy; Abad Chabbi; Xavier Charrier; Christophe de Berranger; Tiffanie Reignier; Samuel Dequiedt; Céline Faivre-Primot; Sébastien Terrat; Lionel Ranjard; Pierre-Alain Maron
Journal:  PLoS One       Date:  2015-06-23       Impact factor: 3.240

8.  Effects of changes in straw chemical properties and alkaline soils on bacterial communities engaged in straw decomposition at different temperatures.

Authors:  Guixiang Zhou; Jiabao Zhang; Congzhi Zhang; Youzhi Feng; Lin Chen; Zhenghong Yu; Xiuli Xin; Bingzi Zhao
Journal:  Sci Rep       Date:  2016-02-26       Impact factor: 4.379

9.  Assessment of Bacterial Communities Associated With the Skin of Costa Rican Amphibians at La Selva Biological Station.

Authors:  Juan G Abarca; Gabriel Vargas; Ibrahim Zuniga; Steven M Whitfield; Douglas C Woodhams; Jacob Kerby; Valerie J McKenzie; Catalina Murillo-Cruz; Adrián A Pinto-Tomás
Journal:  Front Microbiol       Date:  2018-09-03       Impact factor: 5.640

10.  Effects of initial microbial biomass abundance on respiration during pine litter decomposition.

Authors:  Michaeline B N Albright; Andreas Runde; Deanna Lopez; Jason Gans; Sanna Sevanto; Dominic Woolf; John Dunbar
Journal:  PLoS One       Date:  2020-02-14       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.