Literature DB >> 19482036

An evolutionarily conserved family of virion tail needles related to bacteriophage P22 gp26: correlation between structural stability and length of the alpha-helical trimeric coiled coil.

Anshul Bhardwaj1, Nancy Walker-Kopp, Sherwood R Casjens, Gino Cingolani.   

Abstract

Bacteriophages of the Podoviridae family use short noncontractile tails to inject their genetic material into Gram-negative bacteria. In phage P22, the tail contains a thin needle, encoded by the phage gene 26, which is essential both for stabilization and for ejection of the packaged viral genome. Bioinformatic analysis of the N-terminal domain of gp26 (residues 1-60) led us to identify a family of genes encoding putative homologues of the tail needle gp26. To validate this idea experimentally and to explore their diversity, we cloned the gp26-like gene from phages HK620, Sf6 and HS1, and characterized these gene products in solution. All gp26-like factors contain an elongated alpha-helical coiled-coil core consisting of repeating, adjacent trimerization heptads and form trimeric fibers with length ranging between about 240 to 300 A. gp26 tail needles display a high level of structural stability in solution, with T(m) (temperature of melting) between 85 and 95 degrees C. To determine how the structural stability of these phage fibers correlates with the length of the alpha-helical core, we investigated the effect of insertions and deletions in the helical core. In the P22 tail needle, we identified an 85-residue-long helical domain, termed MiCRU (minimal coiled-coil repeat unit), that can be inserted in-frame inside the gp26 helical core, preserving the straight morphology of the fiber. Likewise, we were able to remove three quarters of the helical core of the HS1 tail needle, minimally decreasing the stability of the fiber. We conclude that in the gp26 family of tail needles, structural stability increases nonlinearly with the length of the alpha-helical core. Thus, the overall stability of these bacteriophage fibers is not solely dependent on the number of trimerization repeats in the alpha-helical core.

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Year:  2009        PMID: 19482036      PMCID: PMC2713385          DOI: 10.1016/j.jmb.2009.05.069

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  48 in total

1.  Bacteriophage P22 tail accessory factor GP26 is a long triple-stranded coiled-coil.

Authors:  Dewan Andrews; James S Butler; Jawdat Al-Bassam; Lisa Joss; Danella A Winn-Stapley; Sherwood Casjens; Gino Cingolani
Journal:  J Biol Chem       Date:  2004-12-08       Impact factor: 5.157

Review 2.  The structure of alpha-helical coiled coils.

Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

Review 3.  Protein fibers as performance proteins: new technologies and applications.

Authors:  Thomas Scheibel
Journal:  Curr Opin Biotechnol       Date:  2005-08       Impact factor: 9.740

4.  The structure of an infectious P22 virion shows the signal for headful DNA packaging.

Authors:  Gabriel C Lander; Liang Tang; Sherwood R Casjens; Eddie B Gilcrease; Peter Prevelige; Anton Poliakov; Clinton S Potter; Bridget Carragher; John E Johnson
Journal:  Science       Date:  2006-05-18       Impact factor: 47.728

5.  A possible heterodimeric prophage-like element in the genome of the insect endosymbiont Sodalis glossinidius.

Authors:  Alvin J Clark; Mauricio Pontes; Tait Jones; Colin Dale
Journal:  J Bacteriol       Date:  2007-01-05       Impact factor: 3.490

6.  Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

Review 7.  Intermediate filaments: from cell architecture to nanomechanics.

Authors:  Harald Herrmann; Harald Bär; Laurent Kreplak; Sergei V Strelkov; Ueli Aebi
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

8.  Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.

Authors:  Hidehiro Toh; Brian L Weiss; Sarah A H Perkin; Atsushi Yamashita; Kenshiro Oshima; Masahira Hattori; Serap Aksoy
Journal:  Genome Res       Date:  2005-12-19       Impact factor: 9.043

9.  MultiCoil: a program for predicting two- and three-stranded coiled coils.

Authors:  E Wolf; P S Kim; B Berger
Journal:  Protein Sci       Date:  1997-06       Impact factor: 6.725

10.  Structure of bacteriophage T4 fibritin: a segmented coiled coil and the role of the C-terminal domain.

Authors:  Y Tao; S V Strelkov; V V Mesyanzhinov; M G Rossmann
Journal:  Structure       Date:  1997-06-15       Impact factor: 5.006

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  8 in total

1.  Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions.

Authors:  Anshul Bhardwaj; Rajeshwer S Sankhala; Adam S Olia; Dewey Brooke; Sherwood R Casjens; Derek J Taylor; Peter E Prevelige; Gino Cingolani
Journal:  J Biol Chem       Date:  2015-11-16       Impact factor: 5.157

2.  Atomic structure of bacteriophage Sf6 tail needle knob.

Authors:  Anshul Bhardwaj; Ian J Molineux; Sherwood R Casjens; Gino Cingolani
Journal:  J Biol Chem       Date:  2011-06-25       Impact factor: 5.157

3.  Exploring the atomic structure and conformational flexibility of a 320 Å long engineered viral fiber using X-ray crystallography.

Authors:  Anshul Bhardwaj; Sherwood R Casjens; Gino Cingolani
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-01-29

Review 4.  Architecture of viral genome-delivery molecular machines.

Authors:  Anshul Bhardwaj; Adam S Olia; Gino Cingolani
Journal:  Curr Opin Struct Biol       Date:  2013-11-15       Impact factor: 6.809

5.  The tip of the tail needle affects the rate of DNA delivery by bacteriophage P22.

Authors:  Justin C Leavitt; Lasha Gogokhia; Eddie B Gilcrease; Anshul Bhardwaj; Gino Cingolani; Sherwood R Casjens
Journal:  PLoS One       Date:  2013-08-12       Impact factor: 3.240

6.  Three-dimensional structure of a viral genome-delivery portal vertex.

Authors:  Adam S Olia; Peter E Prevelige; John E Johnson; Gino Cingolani
Journal:  Nat Struct Mol Biol       Date:  2011-04-17       Impact factor: 15.369

7.  In Vitro Studies of Lipopolysaccharide-Mediated DNA Release of Podovirus HK620.

Authors:  Nina K Broeker; Franziska Kiele; Sherwood R Casjens; Eddie B Gilcrease; Anja Thalhammer; Joachim Koetz; Stefanie Barbirz
Journal:  Viruses       Date:  2018-05-29       Impact factor: 5.048

8.  Structure of a Bacterial Virus DNA-Injection Protein Complex Reveals a Decameric Assembly with a Constricted Molecular Channel.

Authors:  Haiyan Zhao; Jeffrey A Speir; Tsutomu Matsui; Zihan Lin; Lingfei Liang; Anna Y Lynn; Brittany Varnado; Thomas M Weiss; Liang Tang
Journal:  PLoS One       Date:  2016-02-16       Impact factor: 3.240

  8 in total

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