Literature DB >> 24529247

The biology of boundary conditions: cellular reconstitution in one, two, and three dimensions.

Michael D Vahey1, Daniel A Fletcher2.   

Abstract

Reconstituting cellular behavior outside the complex environment of the cell allows the study of biological processes in simplified and controlled settings. Making the leap from cells to test tubes, however, carries the inevitable risk of removing too much context and therefore sacrificing the important biochemical, mechanical, or geometrical constraints that guide the system's behavior. In response to this challenge, reconstitution experiments have recently begun to focus not only on including the right molecules but also on faithfully recapitulating the constraints that are present within a cell. By setting the appropriate biological boundary conditions, these experiments are uncovering how dimensional constraints within the cellular environment guide biological processes.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24529247      PMCID: PMC3927145          DOI: 10.1016/j.ceb.2013.10.001

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  52 in total

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Authors:  Stephanie C Weber; Clifford P Brangwynne
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2.  Reconstitution of an actin cortex inside a liposome.

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Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

3.  Forming giant vesicles with controlled membrane composition, asymmetry, and contents.

Authors:  David L Richmond; Eva M Schmid; Sascha Martens; Jeanne C Stachowiak; Nicole Liska; Daniel A Fletcher
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-18       Impact factor: 11.205

4.  GM1 structure determines SV40-induced membrane invagination and infection.

Authors:  Helge Ewers; Winfried Römer; Alicia E Smith; Kirsten Bacia; Serge Dmitrieff; Wengang Chai; Roberta Mancini; Jürgen Kartenbeck; Valérie Chambon; Ludwig Berland; Ariella Oppenheim; Günter Schwarzmann; Ten Feizi; Petra Schwille; Pierre Sens; Ari Helenius; Ludger Johannes
Journal:  Nat Cell Biol       Date:  2009-12-20       Impact factor: 28.824

5.  Restriction of receptor movement alters cellular response: physical force sensing by EphA2.

Authors:  Khalid Salaita; Pradeep M Nair; Rebecca S Petit; Richard M Neve; Debopriya Das; Joe W Gray; Jay T Groves
Journal:  Science       Date:  2010-03-12       Impact factor: 47.728

6.  Geometric catalysis of membrane fission driven by flexible dynamin rings.

Authors:  Anna V Shnyrova; Pavel V Bashkirov; Sergey A Akimov; Thomas J Pucadyil; Joshua Zimmerberg; Sandra L Schmid; Vadim A Frolov
Journal:  Science       Date:  2013-03-22       Impact factor: 47.728

7.  A tissue-like printed material.

Authors:  Gabriel Villar; Alexander D Graham; Hagan Bayley
Journal:  Science       Date:  2013-04-05       Impact factor: 47.728

8.  Evidence for an upper limit to mitotic spindle length.

Authors:  Martin Wühr; Yao Chen; Sophie Dumont; Aaron C Groen; Daniel J Needleman; Adrian Salic; Timothy J Mitchison
Journal:  Curr Biol       Date:  2008-08-26       Impact factor: 10.834

9.  Myelin membrane assembly is driven by a phase transition of myelin basic proteins into a cohesive protein meshwork.

Authors:  Shweta Aggarwal; Nicolas Snaidero; Gesa Pähler; Steffen Frey; Paula Sánchez; Markus Zweckstetter; Andreas Janshoff; Anja Schneider; Marie-Theres Weil; Iwan A T Schaap; Dirk Görlich; Mikael Simons
Journal:  PLoS Biol       Date:  2013-06-04       Impact factor: 8.029

10.  Protocadherins mediate dendritic self-avoidance in the mammalian nervous system.

Authors:  Julie L Lefebvre; Dimitar Kostadinov; Weisheng V Chen; Tom Maniatis; Joshua R Sanes
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

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  12 in total

1.  Reconstitution of proteins on electroformed giant unilamellar vesicles.

Authors:  Eva M Schmid; David L Richmond; Daniel A Fletcher
Journal:  Methods Cell Biol       Date:  2015-04-08       Impact factor: 1.441

Review 2.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

3.  The nucleus acts as a ruler tailoring cell responses to spatial constraints.

Authors:  A J Lomakin; C J Cattin; D Cuvelier; Z Alraies; M Molina; G P F Nader; N Srivastava; P J Sáez; J M Garcia-Arcos; I Y Zhitnyak; A Bhargava; M K Driscoll; E S Welf; R Fiolka; R J Petrie; N S De Silva; J M González-Granado; N Manel; A M Lennon-Duménil; D J Müller; M Piel
Journal:  Science       Date:  2020-10-16       Impact factor: 47.728

Review 4.  Probing the biology of cell boundary conditions through confinement of Xenopus cell-free cytoplasmic extracts.

Authors:  Jessica G Bermudez; Hui Chen; Lily C Einstein; Matthew C Good
Journal:  Genesis       Date:  2017-01       Impact factor: 2.487

5.  Meeting in the Middle: Towards Successful Multidisciplinary Bioimage Analysis Collaboration.

Authors:  Anjalie Schlaeppi; Wilson Adams; Robert Haase; Jan Huisken; Ryan B MacDonald; Kevin W Eliceiri; Elisabeth C Kugler
Journal:  Front Bioinform       Date:  2022-04-14

6.  Single-molecule phospholipase A2 becomes processive on melittin-induced membrane deformations.

Authors:  Tyler A Jepson; Sarah C Hall; Jean K Chung
Journal:  Biophys J       Date:  2022-03-18       Impact factor: 3.699

7.  Simple agarose micro-confinement array and machine-learning-based classification for analyzing the patterned differentiation of mesenchymal stem cells.

Authors:  Nobuyuki Tanaka; Tadahiro Yamashita; Asako Sato; Viola Vogel; Yo Tanaka
Journal:  PLoS One       Date:  2017-04-05       Impact factor: 3.240

8.  Stochastic geometry sensing and polarization in a lipid kinase-phosphatase competitive reaction.

Authors:  Scott D Hansen; William Y C Huang; Young Kwang Lee; Peter Bieling; Sune M Christensen; Jay T Groves
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-05       Impact factor: 11.205

9.  Diffusion-based determination of protein homodimerization on reconstituted membrane surfaces.

Authors:  Tyler A Jepson; Jean K Chung
Journal:  BMB Rep       Date:  2021-03       Impact factor: 4.778

Review 10.  Cell-cell adhesion interface: orthogonal and parallel forces from contraction, protrusion, and retraction.

Authors:  Vivian W Tang
Journal:  F1000Res       Date:  2018-09-25
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