Literature DB >> 35600765

Meeting in the Middle: Towards Successful Multidisciplinary Bioimage Analysis Collaboration.

Anjalie Schlaeppi1, Wilson Adams2,3, Robert Haase4, Jan Huisken1,5, Ryan B MacDonald6, Kevin W Eliceiri1,7, Elisabeth C Kugler6.   

Abstract

With an increase in subject knowledge expertise required to solve specific biological questions, experts from different fields need to collaborate to address increasingly complex issues. To successfully collaborate, everyone involved in the collaboration must take steps to "meet in the middle". We thus present a guide on truly cross-disciplinary work using bioimage analysis as a showcase, where it is required that the expertise of biologists, microscopists, data analysts, clinicians, engineers, and physicists meet. We discuss considerations and best practices from the perspective of both users and technology developers, while offering suggestions for working together productively and how this can be supported by institutes and funders. Although this guide uses bioimage analysis as an example, the guiding principles of these perspectives are widely applicable to other cross-disciplinary work.

Entities:  

Keywords:  bioimage analysis; collaboration; computational science; guide; multidisciplinary

Year:  2022        PMID: 35600765      PMCID: PMC9122012          DOI: 10.3389/fbinf.2022.889755

Source DB:  PubMed          Journal:  Front Bioinform        ISSN: 2673-7647


  17 in total

1.  scikit-image: image processing in Python.

Authors:  Stéfan van der Walt; Johannes L Schönberger; Juan Nunez-Iglesias; François Boulogne; Joshua D Warner; Neil Yager; Emmanuelle Gouillart; Tony Yu
Journal:  PeerJ       Date:  2014-06-19       Impact factor: 2.984

2.  Altmetric Scores, Citations, and Publication of Studies Posted as Preprints.

Authors:  Stylianos Serghiou; John P A Ioannidis
Journal:  JAMA       Date:  2018-01-23       Impact factor: 56.272

3.  NIH Image to ImageJ: 25 years of image analysis.

Authors:  Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-07       Impact factor: 28.547

4.  Developing open-source software for bioimage analysis: opportunities and challenges.

Authors:  Florian Levet; Anne E Carpenter; Kevin W Eliceiri; Anna Kreshuk; Peter Bankhead; Robert Haase
Journal:  F1000Res       Date:  2021-04-19

5.  Ten simple rules for effective computational research.

Authors:  James M Osborne; Miguel O Bernabeu; Maria Bruna; Ben Calderhead; Jonathan Cooper; Neil Dalchau; Sara-Jane Dunn; Alexander G Fletcher; Robin Freeman; Derek Groen; Bernhard Knapp; Greg J McInerny; Gary R Mirams; Joe Pitt-Francis; Biswa Sengupta; David W Wright; Christian A Yates; David J Gavaghan; Stephen Emmott; Charlotte Deane
Journal:  PLoS Comput Biol       Date:  2014-03-27       Impact factor: 4.475

6.  Ten simple rules for reproducible computational research.

Authors:  Geir Kjetil Sandve; Anton Nekrutenko; James Taylor; Eivind Hovig
Journal:  PLoS Comput Biol       Date:  2013-10-24       Impact factor: 4.475

7.  The rise of the middle author: Investigating collaboration and division of labor in biomedical research using partial alphabetical authorship.

Authors:  Philippe Mongeon; Elise Smith; Bruno Joyal; Vincent Larivière
Journal:  PLoS One       Date:  2017-09-14       Impact factor: 3.240

8.  ImageJ2: ImageJ for the next generation of scientific image data.

Authors:  Curtis T Rueden; Johannes Schindelin; Mark C Hiner; Barry E DeZonia; Alison E Walter; Ellen T Arena; Kevin W Eliceiri
Journal:  BMC Bioinformatics       Date:  2017-11-29       Impact factor: 3.169

9.  Scientific Community Image Forum: A discussion forum for scientific image software.

Authors:  Curtis T Rueden; Jeanelle Ackerman; Ellen T Arena; Jan Eglinger; Beth A Cimini; Allen Goodman; Anne E Carpenter; Kevin W Eliceiri
Journal:  PLoS Biol       Date:  2019-06-19       Impact factor: 8.029

10.  CellProfiler Analyst: data exploration and analysis software for complex image-based screens.

Authors:  Thouis R Jones; In Han Kang; Douglas B Wheeler; Robert A Lindquist; Adam Papallo; David M Sabatini; Polina Golland; Anne E Carpenter
Journal:  BMC Bioinformatics       Date:  2008-11-15       Impact factor: 3.169

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