Literature DB >> 24516161

Morphogenesis at criticality.

Dmitry Krotov1, Julien O Dubuis, Thomas Gregor, William Bialek.   

Abstract

Spatial patterns in the early fruit fly embryo emerge from a network of interactions among transcription factors, the gap genes, driven by maternal inputs. Such networks can exhibit many qualitatively different behaviors, separated by critical surfaces. At criticality, we should observe strong correlations in the fluctuations of different genes around their mean expression levels, a slowing of the dynamics along some but not all directions in the space of possible expression levels, correlations of expression fluctuations over long distances in the embryo, and departures from a Gaussian distribution of these fluctuations. Analysis of recent experiments on the gap gene network shows that all these signatures are observed, and that the different signatures are related in ways predicted by theory. Although there might be other explanations for these individual phenomena, the confluence of evidence suggests that this genetic network is tuned to criticality.

Entities:  

Keywords:  Drosophila embryo; genetic networks

Mesh:

Substances:

Year:  2014        PMID: 24516161      PMCID: PMC3956198          DOI: 10.1073/pnas.1324186111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

Review 1.  Computational studies of gene regulatory networks: in numero molecular biology.

Authors:  J Hasty; D McMillen; F Isaacs; J J Collins
Journal:  Nat Rev Genet       Date:  2001-04       Impact factor: 53.242

2.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

3.  Dynamic control of positional information in the early Drosophila embryo.

Authors:  Johannes Jaeger; Svetlana Surkova; Maxim Blagov; Hilde Janssens; David Kosman; Konstantin N Kozlov; Ekaterina Myasnikova; Carlos E Vanario-Alonso; Maria Samsonova; David H Sharp; John Reinitz
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

4.  Regulation of Krüppel expression in the anlage of the Malpighian tubules in the Drosophila embryo.

Authors:  U Gaul; D Weigel
Journal:  Mech Dev       Date:  1990-12       Impact factor: 1.882

5.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

6.  Positional information and the spatial pattern of cellular differentiation.

Authors:  L Wolpert
Journal:  J Theor Biol       Date:  1969-10       Impact factor: 2.691

7.  Mutations affecting segment number and polarity in Drosophila.

Authors:  C Nüsslein-Volhard; E Wieschaus
Journal:  Nature       Date:  1980-10-30       Impact factor: 49.962

8.  The products of the Drosophila gap genes hunchback and Krüppel bind to the hunchback promoters.

Authors:  J Treisman; C Desplan
Journal:  Nature       Date:  1989-09-28       Impact factor: 49.962

9.  cis-acting control elements for Krüppel expression in the Drosophila embryo.

Authors:  M Hoch; C Schröder; E Seifert; H Jäckle
Journal:  EMBO J       Date:  1990-08       Impact factor: 11.598

10.  Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens bicoid and hunchback.

Authors:  M Hoch; E Seifert; H Jäckle
Journal:  EMBO J       Date:  1991-08       Impact factor: 11.598

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10.  Percolation Model of Sensory Transmission and Loss of Consciousness Under General Anesthesia.

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