Literature DB >> 31341700

Redesign of a Copper Storage Protein into an Artificial Hydrogenase.

Dhanashree Selvan1, Pallavi Prasad1, Erik R Farquhar2, Yelu Shi3, Skyler Crane1, Yong Zhang3, Saumen Chakraborty1.   

Abstract

We report the construction of an artificial hydrogenase (ArH) by reengineering a Cu storage protein (Cspl) into a Ni-binding protein (NBP) employing rational metalloprotein design. The hypothesis driven design approach involved deleting existing Cu sites of Csp1 and identification of a target tetrathiolate Ni binding site within the protein scaffold followed by repacking the hydrophobic core. Guided by modeling, the NBP was expressed and purified in high purity. NBP is a well-folded and stable construct displaying native-like unfolding behavior. Spectroscopic and computational studies indicated that the NBP bound nickel in a distorted square planar geometry that validated the design. Ni(II)-NBP is active for photo-induced H2 evolution following a reductive quenching mechanism. Ni(II)-NBP catalyzed H+ reduction to H2 gas electrochemically as well. Analysis of the catalytic voltammograms established a proton-coupled electron transfer (PCET) mechanism. Electrolysis studies confirmed H2 evolution with quantitative Faradaic yields. Our studies demonstrate an important scope of rational metalloprotein design that allows imparting functions into protein scaffolds that have natively not evolved to possess the same function of the target metalloprotein constructs.

Entities:  

Keywords:  Protein design; artificial metalloenzymes; catalysis; hydrogenases; spectroscopy

Year:  2019        PMID: 31341700      PMCID: PMC6656401          DOI: 10.1021/acscatal.9b00360

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  62 in total

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2.  Enzyme electrokinetics: hydrogen evolution and oxidation by Allochromatium vinosum [NiFe]-hydrogenase.

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3.  Scalable molecular dynamics with NAMD.

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4.  ATHENA, ARTEMIS, HEPHAESTUS: data analysis for X-ray absorption spectroscopy using IFEFFIT.

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5.  Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions.

Authors:  Norma J Greenfield
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

Review 6.  Structure/function relationships of [NiFe]- and [FeFe]-hydrogenases.

Authors:  Juan C Fontecilla-Camps; Anne Volbeda; Christine Cavazza; Yvain Nicolet
Journal:  Chem Rev       Date:  2007-09-13       Impact factor: 60.622

7.  Spectroscopic studies of cobalt and nickel substituted rubredoxin and desulforedoxin.

Authors:  I Moura; M Teixeira; J LeGall; J J Moura
Journal:  J Inorg Biochem       Date:  1991-11       Impact factor: 4.155

8.  Activation process of [NiFe] hydrogenase elucidated by high-resolution X-ray analyses: conversion of the ready to the unready state.

Authors:  Hideaki Ogata; Shun Hirota; Asuka Nakahara; Hirofumi Komori; Naoki Shibata; Tatsuhisa Kato; Kenji Kano; Yoshiki Higuchi
Journal:  Structure       Date:  2005-11       Impact factor: 5.006

9.  Hydrogen production and deuterium-proton exchange reactions catalyzed by Desulfovibrio nickel(II)-substituted rubredoxins.

Authors:  P Saint-Martin; P A Lespinat; G Fauque; Y Berlier; J Legall; I Moura; M Teixeira; A V Xavier; J J Moura
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10.  Heme attachment motif mobility tunes cytochrome c redox potential.

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Journal:  Biochemistry       Date:  2007-09-28       Impact factor: 3.162

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  7 in total

Review 1.  Biosynthetic Approaches towards the Design of Artificial Hydrogen-Evolution Catalysts.

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Journal:  Chemistry       Date:  2020-08-26       Impact factor: 5.236

2.  The oxygen reactivity of an artificial hydrogenase designed in a reengineered copper storage protein.

Authors:  Dhanashree Selvan; Yelu Shi; Pallavi Prasad; Skyler Crane; Yong Zhang; Saumen Chakraborty
Journal:  Dalton Trans       Date:  2020-01-23       Impact factor: 4.390

3.  A De Novo-Designed Artificial Metallopeptide Hydrogenase: Insights into Photochemical Processes and the Role of Protonated Cys.

Authors:  Sreya Malayam Parambath; Ashley E Williams; Leigh Anna Hunt; Dhanashree Selvan; Nathan I Hammer; Saumen Chakraborty
Journal:  ChemSusChem       Date:  2021-04-28       Impact factor: 8.928

Review 4.  Repurposing metalloproteins as mimics of natural metalloenzymes for small-molecule activation.

Authors:  Daniel J DiPrimio; Patrick L Holland
Journal:  J Inorg Biochem       Date:  2021-03-18       Impact factor: 4.336

5.  Identifying metal binding amino acids based on backbone geometries as a tool for metalloprotein engineering.

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6.  Remarkable stability of a molecular ruthenium complex in PEM water electrolysis.

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Journal:  Chem Sci       Date:  2022-03-03       Impact factor: 9.825

Review 7.  Recent Progress Using De Novo Design to Study Protein Structure, Design and Binding Interactions.

Authors:  Juan Ferrando; Lee A Solomon
Journal:  Life (Basel)       Date:  2021-03-10
  7 in total

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